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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
4
eQTL
2
accessible chromatin
2
target gene predictions
1
binding sites
1
candidate regulatory elements
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
21
stomach
20
heart
18
muscle of arm
17
lung
16
kidney
15
muscle of back
14
adrenal gland
14
brain
14
large intestine
14
muscle of leg
14
small intestine
13
left lung
12
placenta
12
renal cortex interstitium
11
renal pelvis
11
right kidney
11
right lung
9
left kidney
9
spleen
9
thymus
8
heart left ventricle
7
spinal cord
6
liver
5
body of pancreas
5
left renal cortex interstitium
5
left renal pelvis
5
right renal pelvis
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
5
tibial nerve
4
Peyer's patch
4
chorionic villus
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
heart right ventricle
4
lower leg skin
4
muscle of trunk
4
ovary
4
pancreas
4
retina
4
right renal cortex interstitium
4
testis
4
thyroid gland
4
transverse colon
4
upper lobe of left lung
3
ascending aorta
3
breast epithelium
3
caudate nucleus
3
coronary artery
3
endocrine pancreas
3
esophagus muscularis mucosa
3
layer of hippocampus
3
omental fat pad
3
parathyroid adenoma
3
psoas muscle
3
right atrium auricular region
3
skeletal muscle tissue
3
subcutaneous adipose tissue
3
substantia nigra
3
suprapubic skin
3
temporal lobe
3
thoracic aorta
3
tibial artery
2
muscle of leg
2
adipose tissue
2
angular gyrus
2
aorta
2
chorion
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus
2
eye
2
globus pallidus
2
left cardiac atrium
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
placental basal plate
2
prostate gland
2
putamen
2
stomach smooth muscle
2
tongue
2
trophoblast
2
uterus
2
vagina
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Ammon's horn
1
amnion
1
cerebellar cortex
1
cerebellum
1
cerebellum (Hemisphere)
1
femur
1
forelimb muscle
1
frontal cortex
1
germinal matrix
1
hindlimb muscle
1
islet of Langerhans
1
left leg bone
1
limb
1
medulla oblongata
1
midbrain
1
mucosa of stomach
1
occipital lobe
1
pons
1
rectal smooth muscle tissue
1
right arm bone
1
right cardiac atrium
1
right lobe of liver
1
superior temporal gyrus
1
umbilical cord
Organ
2
adipose tissue
2
connective tissue
Life stage
1
adult
Date released
1
February, 2021
1
May, 2020
Software used
r
1
deltasvm
1
encode-ccres
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
urinary bladder
software_used.software.name!
r
Showing 2 of 2 results
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Download
FileSet
DSR049CRC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088HBN
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose subcutaneous ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP