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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
7
gene expression
4
candidate regulatory elements
3
chromatin state
2
histone modifications
2
target gene predictions
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
5
DNase-seq
4
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
27
common myeloid progenitor, CD34-positive
21
A549
19
hematopoietic multipotent progenitor cell
17
B cell
14
CD4-positive, alpha-beta memory T cell
13
spleen
13
stomach
12
adrenal gland
11
foreskin keratinocyte
10
liver
10
sigmoid colon
9
MCF-7
9
body of pancreas
9
fibroblast
9
heart left ventricle
9
natural killer cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
adipose tissue
8
gastrocnemius medialis
8
thyroid gland
8
tibial nerve
8
transverse colon
7
CD8-positive, alpha-beta T cell
7
K562
7
Peyer's patch
7
adipocyte
7
endocrine pancreas
7
endothelial cell of umbilical vein
7
foreskin fibroblast
7
mononuclear cell
7
psoas muscle
7
upper lobe of left lung
6
T cell
6
T-helper 1 cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
esophagus squamous epithelium
6
fibroblast of lung
6
layer of hippocampus
6
lower leg skin
6
macrophage
6
ovary
6
pancreas
6
skeletal muscle tissue
6
small intestine
5
HeLa-S3
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
ascending aorta
5
breast epithelium
5
coronary artery
5
endothelial cell
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
heart
5
heart right ventricle
5
kidney
5
lung
5
omental fat pad
5
parathyroid adenoma
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tibial artery
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
bronchial epithelial cell
4
cardiac muscle cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
epithelial cell of esophagus
4
epithelial cell of prostate
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
hepatocyte
4
keratinocyte
4
mammary gland epithelial cell
4
mast cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
myofibroblast cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
prostate gland
4
smooth muscle cell
4
stomach smooth muscle
4
testis
4
vagina
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of proximal tubule
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
lung microvascular endothelial cell
3
mammary epithelial cell
3
middle frontal gyrus
3
naive T cell
3
pericyte cell
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
subcutaneous adipose tissue
3
suprapubic skin
3
uterus
2
cardiac fibroblast
2
muscle of leg
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HepG2
2
KBM-7
2
KMS-11
2
KOPT-K1
2
L1-S8
2
LHCN-M2
2
LNCAP
2
Loucy
2
M059J
2
MG63
2
MIN6
2
MM.1S
2
NAMALWA
2
NAMALWA cell
2
NB4
2
NCI-H929
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
PC-9
2
Panc1
Organ
5
kidney
Life stage
embryonic
4
adult
1
fetal
Date released
2
February, 2021
2
September, 2022
1
May, 2020
Software used
2
encode-ccres
2
r
1
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
left kidney
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR636DQS
released
Annotation file set
: Candidate regulatory elements for BSS01097 kidney from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR103NJL
released
Annotation file set
: Candidate regulatory elements for BSS01096 kidney from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR778MFT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR023URV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821RRV
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP