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Schema
Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
40
stomach
37
heart
33
lung
33
muscle of arm
29
brain
29
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
renal cortex interstitium
20
right kidney
20
thymus
19
hematopoietic multipotent progenitor cell
19
renal pelvis
18
left kidney
17
B cell
15
spleen
14
CD4-positive, alpha-beta memory T cell
14
spinal cord
13
liver
11
foreskin keratinocyte
11
heart left ventricle
10
sigmoid colon
9
MCF-7
9
natural killer cell
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
transverse colon
7
CD8-positive, alpha-beta T cell
7
H9
7
K562
7
Peyer's patch
7
adipose tissue
7
endocrine pancreas
7
foreskin fibroblast
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
testis
7
upper lobe of left lung
6
T-helper 1 cell
6
adipocyte
6
cardiac muscle cell
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
fibroblast of lung
6
heart right ventricle
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
retina
6
right renal pelvis
6
skeletal muscle tissue
6
tibial nerve
5
HeLa-S3
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
breast epithelium
5
caudate nucleus
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
neural progenitor cell
5
omental fat pad
5
pancreas
5
parathyroid adenoma
5
regulatory T cell
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T cell
4
T-cell
4
angular gyrus
4
aorta
4
ascending aorta
4
bronchial epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
hepatocyte
4
mesenchymal stem cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuronal stem cell
4
neutrophil
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle myoblast
4
smooth muscle cell
4
stomach smooth muscle
4
thoracic aorta
4
tongue
4
trophoblast
4
vagina
3
HEK293
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
cardiac fibroblast
3
cerebellum
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
endothelial cell
3
endothelial cell of lymphatic vessel
3
fibroblast
3
fibroblast of cardiac tissue
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
macrophage
3
mammary epithelial cell
3
mammary gland epithelial cell
3
mast cell
3
naive T cell
3
neural cell
3
pericyte cell
3
right atrium auricular region
3
suprapubic skin
3
tibial artery
3
urinary bladder
3
uterus
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
DND-41
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
GM12864
2
GM12865
2
GM12875
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HUES48
2
HUES6
2
HUES64
2
HepG2
2
IMR-90
Organ
2
bone element
Life stage
2
adult
Date released
1
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
GM12864
disease_term_name!
large-cell immunoblastic lymphoma
Showing 2 of 2 results
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Download
FileSet
DSR861VXZ
released
Annotation file set
: Candidate regulatory elements for BSS00704 HS-27A from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR684HXQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HS-27A
Lab:
AMP-T2D consortium
Project:
AMP