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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
11
accessible chromatin
8
target gene predictions
5
candidate regulatory elements
4
histone modifications
3
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
cell line
Biosample term
11
foreskin keratinocyte
7
adipose tissue
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
5
breast epithelium
5
omental fat pad
5
subcutaneous abdominal adipose tissue
4
bronchial epithelial cell
4
epithelial cell of prostate
4
hepatocyte
4
myoepithelial cell of mammary gland
3
endothelial cell
3
endothelial cell of lymphatic vessel
3
keratinocyte
3
kidney tubule cell
3
lung microvascular endothelial cell
3
mammary epithelial cell
3
mammary gland epithelial cell
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
endocardial cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
iris pigment epithelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
non-pigmented ciliary epithelial cell
2
pulmonary artery endothelial cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
subcutaneous adipose tissue
1
amniotic epithelial cell
1
cholangiocyte
1
colon epithelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
kidney capillary endothelial cell
1
luminal epithelial cell of mammary gland
Disease term
1
liver disease
Organ
5
epithelium
4
liver
1
intestine
1
large intestine
0
adipose tissue
Life stage
2
embryonic
2
unknown
1
adult
Date released
3
September, 2022
1
February, 2021
1
May, 2024
Software used
3
r
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
4
AMP
1
AMP2
Showing 5 of 5 results
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FileSet
DSR529HOM
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of hepatocyte derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR201DTC
released
Annotation file set
: Candidate regulatory elements for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR654OFJ
released
Annotation file set
: Candidate regulatory elements for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR635VAQ
released
Annotation file set
: Candidate regulatory elements for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731RPD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hepatocyte
Lab:
AMP-T2D consortium
Project:
AMP