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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
12
accessible chromatin
6
chromatin state
4
candidate regulatory elements
3
binding sites
3
histone modifications
2
variant allelic effects
1
eQTL
1
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
14
common myeloid progenitor, CD34-positive
9
hematopoietic multipotent progenitor cell
8
CD4-positive, alpha-beta T cell
8
spleen
7
CD8-positive, alpha-beta T cell
7
foreskin keratinocyte
7
stomach
6
B cell
6
adrenal gland
5
CD4-positive, alpha-beta memory T cell
5
foreskin fibroblast
5
liver
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
body of pancreas
4
dermis blood vessel endothelial cell
4
endothelial cell of umbilical vein
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
heart left ventricle
4
lower leg skin
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
peripheral blood mononuclear cell
4
thyroid gland
4
transverse colon
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 1 cell
3
breast epithelium
3
endocrine pancreas
3
esophagus muscularis mucosa
3
fibroblast of lung
3
foreskin melanocyte
3
layer of hippocampus
3
lung
3
mammary epithelial cell
3
natural killer cell
3
omental fat pad
3
ovary
3
pancreas
3
parathyroid adenoma
3
psoas muscle
3
skeletal muscle tissue
3
small intestine
3
substantia nigra
3
suprapubic skin
3
temporal lobe
3
tibial nerve
2
22Rv1
2
AG10803
2
HeLa-S3
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T-helper 17 cell
2
T-helper 2 cell
2
adipocyte
2
angular gyrus
2
aorta
2
ascending aorta
2
bronchial epithelial cell
2
cardiac fibroblast
2
cardiac muscle cell
2
caudate nucleus
2
cingulate gyrus
2
colonic mucosa
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
epithelial cell of prostate
2
esophagus
2
fibroblast of breast
2
heart right ventricle
2
kidney
2
lung microvascular endothelial cell
2
middle frontal area 46
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
prostate gland
2
regulatory T cell
2
skeletal muscle myoblast
2
stomach smooth muscle
2
subcutaneous adipose tissue
2
testis
2
thoracic aorta
2
uterus
2
vagina
1
A172
1
A673
1
ACC112
1
ACHN
1
AG09309
1
AG09319
1
Ammon's horn
1
BE2C
1
BJ
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12864
1
GM12865
1
GM12873
1
GM12874
1
GM12875
1
GM12878
1
GM13976
1
GM13977
1
GM20000
1
GM23248
1
GM23338
1
H4
1
H54
1
HAP-1
1
HCEC 1CT
1
HCT116
1
HFF-Myc
1
HK-2
1
HL-60
1
HS-27A
1
HS-5
1
HT-29
1
HT1080
1
HepG2
1
Ishikawa
1
Jurkat, Clone E6-1
1
K562
1
KBM-7
1
KMS-11
1
KOPT-K1
1
Karpas-422
1
L1-S8
1
LHCN-M2
1
LNCaP clone FGC
1
LoVo
1
Loucy
1
M059J
1
MG63
1
MM.1S
1
NB4
1
NCI-H226
1
NCI-H460
1
NCI-H929
1
NT2/D1
1
OCI-LY1
1
OCI-LY3
1
OCI-LY7
1
PC-3
1
PC-9
1
Panc1
1
RCC
1
RCC 7860
1
RKO
1
RPMI7951
1
RPMI8226
1
RWPE1
1
RWPE2
1
SJCRH30
1
SJSA1
1
SK-MEL-5
1
SK-N-MC
1
SU-DHL-6
1
SW480
1
T47D
1
VCaP
1
WERI-Rb-1
1
adipose tissue
1
amniotic epithelial cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
Organ
2
kidney
Life stage
embryonic
3
adult
1
unknown
Date released
4
February, 2021
Software used
4
encode-ccres
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
ureter
relevant_life_stage!
embryonic
software_used.software.name!
r
Showing 4 of 4 results
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Download
FileSet
DSR252LYQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR330AXB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR778MFT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR023URV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE kidney
Lab:
AMP-T2D consortium
Project:
AMP