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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
candidate regulatory elements
6
target gene predictions
5
accessible chromatin
5
chromatin state
3
Fine-mapped variants
3
eQTL
3
gene expression
binding sites
1
caQTL
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
5
bed bed9
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
tissue
1
primary cell
Biosample term
6
adipocyte
6
adipose tissue
4
fibroblast of lung
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
mesenchymal stem cell
2
foreskin fibroblast
2
omental fat pad
2
skin fibroblast
1
HT1080
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
hepatic stellate cell
1
osteoblast
1
pericyte cell
1
stromal cell of bone marrow
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
Organ
5
connective tissue
2
adipose tissue
Life stage
4
adult
1
embryonic
Date released
4
September, 2022
1
October, 2019
Software used
5
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
binding sites
organ_slims!
limb
Showing 5 of 5 results
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Download
FileSet
DSR895SUM
released
Annotation file set
: Chromatin states for BSS01394 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR486UUL
released
Annotation file set
: Chromatin states for BSS01393 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP