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Schema
Citing CMDGA
Clear Filters
Annotation type
41
target gene predictions
8
gene expression
candidate regulatory elements
4
chromatin state
2
binding sites
1
accessible chromatin
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
3
bed bed9
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
stem cell
Biosample term
5
trophoblast cell
4
chorionic villus
4
foreskin keratinocyte
3
fibroblast of dermis
3
keratinocyte
2
H1-hESC
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
foreskin fibroblast
2
lower leg skin
2
skin fibroblast
2
trophoblast
1
COLO829
1
ELF-1
1
ES-I3
1
GM23248
1
H4
1
H7-hESC
1
H9
1
HUES48
1
HUES6
1
HUES64
1
RPMI7951
1
SK-MEL-5
1
UCSF-4
1
cardiac mesoderm primordium
1
ectodermal cell
1
embryonic facial prominence
1
epidermal melanocyte
1
iPS DF 19.11
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
mesodermal cell
1
skin of body
Organ
2
blood vessel
2
embryo
2
epithelium
2
skin of body
2
vasculature
Life stage
2
embryonic
1
adult
1
newborn
Date released
3
September, 2022
1
August, 2017
Software used
4
chromhmm
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
annotation_type!
candidate regulatory elements
Showing 4 of 4 results
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FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR734HYX
released
Annotation file set
: Chromatin states for BSS00260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847QEV
released
Annotation file set
: Chromatin states for BSS00258 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP