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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
chromatin state
3
Fine-mapped variants
3
accessible chromatin
3
target gene predictions
2
eQTL
2
gene expression
2
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
4
bed bed9
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
tibial nerve
Organ
77
kidney
71
musculature of body
70
lung
66
brain
55
intestine
51
heart
50
epithelium
50
limb
41
connective tissue
34
skin of body
33
extraembryonic component
33
large intestine
32
vasculature
27
blood vessel
27
embryo
25
bodily fluid
23
blood
23
stomach
19
small intestine
16
placenta
15
bone element
14
adrenal gland
14
liver
14
mammary gland
14
pancreas
13
prostate gland
13
ureter
11
thymus
10
penis
9
eye
8
adipose tissue
8
artery
8
gonad
8
lymph node
8
spinal cord
7
esophagus
6
spleen
5
lymphoid tissue
4
mouth
4
nerve
4
ovary
4
testis
4
thyroid gland
4
uterus
4
vein
3
skeleton
2
bone marrow
2
breast
2
bronchus
2
lymphatic vessel
2
tongue
2
urinary bladder
vagina
1
nose
Life stage
4
adult
Date released
3
September, 2022
1
May, 2020
Software used
4
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
hQTL
month_released!
August, 2017
organ_slims!
vagina
Showing 4 of 4 results
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Download
FileSet
DSR677PFH
released
Annotation file set
: Chromatin states for BSS01842 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR344NSW
released
Annotation file set
: Chromatin states for BSS01841 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR764TDU
released
Annotation file set
: Chromatin states for BSS01840 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR205IDN
released
Annotation file set
: ChromHMM 18-state model for nerve tibial from 28 ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP