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Schema
Citing CMDGA
Clear Filters
Annotation type
13
accessible chromatin
13
eQTL
12
gene expression
5
binding sites
3
chromatin state
3
histone modifications
2
Fine-mapped variants
2
sQTL
2
target gene predictions
variant to gene
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
6
bigBed bed9
bed bed9
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
7
mature neutrophil
5
CD14-positive, CD16-negative classical monocyte
5
left cardiac atrium
4
adipocyte
4
alternatively activated macrophage
3
CD4-positive, alpha-beta T cell
3
inflammatory macrophage
3
islet of Langerhans
2
ESC derived cell line
2
erythroblast
2
liver
1
BL-2 cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
DG-75 cell
1
GM12878
1
H1-hESC
1
HepG2
1
JVM-2 cell
1
K562
1
KARPAS-422 cell
1
SUDHL5
1
U-266 cell
1
Z-138
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
keratinocyte
1
layer of hippocampus
1
mammary epithelial cell
1
mature eosinophil
1
mid-frontal lobe
1
mucosa of rectum
1
pancreas
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
3
pancreas
Date released
2
August, 2017
1
April, 2019
Software used
3
chromhmm
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
annotation_type!
variant to gene
files.file_type!
bed bed9
Showing 3 of 3 results
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Download
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP