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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
56
target gene predictions
13
eQTL
11
gene expression
7
accessible chromatin
6
chromatin state
5
candidate regulatory elements
3
binding sites
2
Fine-mapped variants
2
sQTL
2
variant to gene
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
4
bed bed3+
3
bed bed9
1
bigBed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
4
tissue
3
cell line
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
22
heart
21
brain
20
neural progenitor cell
20
stomach
19
A549
18
kidney
16
lung
16
muscle of arm
16
placenta
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
thymus
11
breast cancer cell
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
B cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
K562
8
Rhabdomyosarcoma
8
mature neutrophil
8
neuroblastoma cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
HepG2
7
MCF-7
7
adipocyte
7
diffuse intrinsic pontine glioma
7
embryonic stem cell
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
adipose tissue
6
hESC cell
6
hepatocyte
6
keratinocyte
6
left cardiac atrium
6
liposarcoma
6
mononuclear cell
6
neuroblastoma cell line
6
spleen
6
squamous cell lung carcinoma
6
temporal lobe
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T cell
5
T-cell acute lymphoblastic leukemia
5
caudate nucleus
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
heart right ventricle
5
layer of hippocampus
5
melanoma cell
5
natural killer cell
5
osteosarcoma
5
sigmoid colon
4
CD14-positive monocyte
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
chorionic villus
4
colonic mucosa
4
endocrine pancreas
4
fibroblast of lung
4
foreskin fibroblast
4
gastrocnemius medialis
4
islet of Langerhans
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
acute myeloid leukemia
3
ascending aorta
3
cardiac muscle cell
3
cerebellum
3
chorion membrane
3
cingulate gyrus
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
duodenal mucosa
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophageal squamous cell carcinoma
3
fibroblast of dermis
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
lymphoblast
3
lymphoblastoid cell line
3
mucosa of rectum
3
naive T cell
3
neuronal stem cell
3
neurosphere
3
osteoblast
3
pancreatic ductal adenocarcinoma
3
right cardiac atrium
3
skin fibroblast
3
stomach smooth muscle
3
thoracic aorta
3
tibial artery
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
ESC derived cell line
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HuH-7
2
IMR-90
2
JVM-2 cell
2
Jurkat
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NT2-D1 cell
2
OCI-LY1
2
OCI-LY7
2
PC-3
2
PC-9
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Rh-4 cell
2
SK-MEL-5
Disease term
3
cervical adenocarcinoma
Organ
4
pancreas
3
uterus
Life stage
3
adult
Date released
3
September, 2022
2
August, 2017
1
April, 2019
1
February, 2021
Software used
6
chromhmm
1
macs
Lab
5
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
biosample_term_name!
hematopoietic multipotent progenitor cell
Showing 7 of 7 results
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Download
FileSet
DSR128RYD
released
Annotation file set
: Chromatin states for BSS00541 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR261FYE
released
Annotation file set
: Chromatin states for BSS00531 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR316DOX
released
Annotation file set
: Chromatin states for BSS00529 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR538IPB
released
Annotation file set
: Histone modifications annotation for Pancreas Pancreatic_islets from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP