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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
target gene predictions
4
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
1
RNA-seq
Available data
4
bed bed9
1
bed bed3+
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
Biosample term
20
stomach
19
heart
18
A549
18
brain
17
lung
16
muscle of arm
16
small intestine
15
adrenal gland
15
islet of Langerhans
15
kidney
15
liver
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
11
right lung
11
thymus
10
adipose tissue
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
K562
7
macrophage
7
mature neutrophil
7
spleen
7
subcutaneous adipose tissue
6
T cell
6
adipocyte
6
caudate nucleus
6
heart left ventricle
6
left cardiac atrium
6
lymphoblastoid cell line
6
mononuclear cell
6
substantia nigra
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
body of pancreas
5
layer of hippocampus
5
ovary
5
regulatory T cell
5
sigmoid colon
5
skeletal muscle tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gastrocnemius medialis
4
monocyte
4
muscle of trunk
4
natural killer cell
4
neural progenitor cell
4
neutrophil
4
omental fat pad
4
psoas muscle
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
ascending aorta
3
blood cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
pancreas
3
prostate gland
3
skeletal muscle myoblast
3
stomach smooth muscle
3
temporal lobe
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
aorta
2
articular chondrocyte
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cartilage tissue
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
foreskin fibroblast
2
hepatocyte
2
hypothalamus
2
iPSC derived cell line
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
nucleus accumbens
2
parathyroid adenoma
2
rectum smooth muscle tissue
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
skin fibroblast
2
smooth muscle cell
2
thoracic aorta
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
Disease term
1
clear cell renal carcinoma
Organ
3
connective tissue
1
kidney
Life stage
2
adult
1
embryonic
Date released
3
September, 2022
1
February, 2024
Software used
3
chromhmm
1
qTLtools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
award.project!
ENCODE
files.file_type!
bigBed bed9
Showing 4 of 4 results
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Download
FileSet
DSR032YTT
released
Annotation file set
: Chromatin states for BSS00160 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP