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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
3
candidate regulatory elements
2
chromatin state
2
eQTL
2
histone modifications
2
target gene predictions
2
variant allelic effects
1
binding sites
1
gene expression
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
RNA-seq
Available data
2
bed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
20
brain
20
heart
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
stomach
14
kidney
14
small intestine
13
large intestine
13
left lung
13
muscle of back
12
islet of Langerhans
11
right lung
11
thymus
10
right kidney
9
adrenal gland
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
liver
8
spinal cord
7
macrophage
6
CD4-positive, alpha-beta memory T cell
6
heart left ventricle
6
left cardiac atrium
6
lymphoblastoid cell line
5
adipocyte
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
trophoblast cell
4
T-helper 17 cell
4
chorionic villus
4
foreskin keratinocyte
4
heart right ventricle
4
muscle of trunk
4
neural progenitor cell
4
skin of body
3
CD14-positive, CD16-negative classical monocyte
3
T cell
3
blood cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
fibroblast of lung
3
keratinocyte
3
monocyte
3
neurosphere
3
neutrophil
3
regulatory T cell
3
retina
3
spleen
3
substantia nigra
2
22Rv1
2
B cell
2
CD8-positive, alpha-beta memory T cell
2
ESC derived cell line
2
H1-hESC
2
HepG2
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T-helper 1 cell
2
T-helper 2 cell
2
adipose tissue
2
alternatively activated macrophage
2
bronchial epithelial cell
2
caudate nucleus
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
eye
2
fibroblast
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
foreskin fibroblast
2
germinal matrix
2
hepatocyte
2
iPSC derived cell line
2
layer of hippocampus
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
mature neutrophil
2
mesenchymal stem cell
2
muscle
2
ovary
2
pancreas
2
putamen
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
skin fibroblast
2
smooth muscle cell
2
subcutaneous adipose tissue
2
testis
2
tongue
2
trophoblast
1
A673
1
AG04449 cell
1
AG04450 cell
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
CD14-positive monocyte
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
CWRU1
1
DG-75 cell
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18507
1
H7-hESC
1
H9
1
HEK293
1
HEK293T
1
HK-2 cell
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
IMR-90
1
JVM-2 cell
1
K562
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
Leydig cell
1
MG63
1
NCI-H460 cell
1
NT2-D1 cell
1
PC-9
1
Panc1
1
SJCRH30
1
SK-N-MC
1
SUDHL5
1
T follicular helper cell
1
U-266 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
Z-138
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
amygdala
1
anterior cingulate cortex
1
arm bone
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
breast
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cerebellar hemisphere
1
cerebellum
1
choroid plexus epithelial cell
1
cingulate gyrus
1
colon carcinoma
1
colon epithelial cell
1
colon sigmoid
1
colonic mucosa
1
coronary artery
1
cortex
1
cortex of kidney
1
dermis blood vessel endothelial cell
1
dorsolateral prefrontal cortex
1
duodenal mucosa
1
ectodermal cell
1
embryonic facial prominence
1
endocrine pancreas
1
endothelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
esophagus
Life stage
adult
2
unknown
Date released
2
January, 2022
2
September, 2022
Software used
2
chromhmm
2
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
relevant_life_stage!
adult
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR613TOE
released
Annotation file set
: Chromatin states for BSS01684 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR841XEM
released
Annotation file set
: Chromatin states for BSS00543 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR964AAD
released
Annotation file set
: T-cell eQTL of studay GENCORD from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR840PUI
released
Annotation file set
: T-cell eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP