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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
7
gene expression
5
candidate regulatory elements
4
chromatin state
3
target gene predictions
2
histone modifications
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
1
RNA-seq
Available data
4
bed bed9
1
bed bed3+
1
bigBed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
cell line
Biosample term
18
A549
16
islet of Langerhans
14
liver
13
common myeloid progenitor, CD34-positive
10
adipose tissue
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adrenal gland
7
heart left ventricle
7
macrophage
7
mature neutrophil
7
stomach
7
subcutaneous adipose tissue
6
T cell
6
adipocyte
6
caudate nucleus
6
lymphoblastoid cell line
6
mononuclear cell
6
spleen
6
substantia nigra
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
body of pancreas
5
coronary artery
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
layer of hippocampus
5
left cardiac atrium
5
regulatory T cell
5
sigmoid colon
5
skeletal muscle tissue
5
temporal lobe
5
thyroid gland
5
tibial artery
5
transverse colon
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
brain
4
cerebellum
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gastrocnemius medialis
4
heart right ventricle
4
kidney
4
monocyte
4
natural killer cell
4
neutrophil
4
omental fat pad
4
ovary
4
pancreas
4
psoas muscle
4
putamen
4
right atrium auricular region
4
small intestine
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
blood cell
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
heart
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
lung
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
prostate gland
3
right cardiac atrium
3
skeletal muscle myoblast
3
skin of body
3
stomach smooth muscle
3
testis
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cartilage tissue
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus squamous epithelium
2
fibroblast
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
hypothalamus
2
iPSC derived cell line
2
kidney tubule cell
2
lower leg skin
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
nucleus accumbens
2
parathyroid adenoma
2
rectum smooth muscle tissue
2
right lobe of liver
2
skeletal muscle satellite cell
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELR
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
GM12892
1
GM18507
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GM23338
1
H4
1
H54
1
HAP-1
1
HCT116
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT-29
Disease term
1
metastatic melanoma
Organ
4
kidney
1
skin of body
Life stage
embryonic
4
adult
Date released
3
September, 2022
1
August, 2021
1
May, 2019
Software used
4
chromhmm
1
matrix-eQTL
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
4
AMP
1
AMP2
biosample_term_name!
GM12892
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR783EGQ
released
Annotation file set
: Chromatin states for BSS00222 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR205PVO
released
Annotation file set
: Chromatin states for BSS01097 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181LMN
released
Annotation file set
: Chromatin states for BSS01096 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR394RHU
released
Annotation file set
: ChromHMM 12-state model for adult kidney from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP