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Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
4
chromatin state
4
target gene predictions
2
eQTL
2
hQTL
1
meQTL
1
sQTL
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
4
ChIP-seq
2
RNA-seq
Available data
3
bed bed9
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
tissue
Biosample term
21
heart
20
brain
20
stomach
18
A549
17
kidney
17
lung
16
islet of Langerhans
16
liver
16
muscle of arm
16
small intestine
15
adrenal gland
15
muscle of leg
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right lung
11
thymus
10
adipose tissue
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
K562
7
macrophage
7
mature neutrophil
7
spleen
7
subcutaneous adipose tissue
6
T cell
6
adipocyte
6
caudate nucleus
6
left cardiac atrium
6
lymphoblastoid cell line
6
mononuclear cell
6
substantia nigra
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
body of pancreas
5
coronary artery
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
heart right ventricle
5
layer of hippocampus
5
ovary
5
regulatory T cell
5
sigmoid colon
5
skeletal muscle tissue
5
temporal lobe
5
thyroid gland
5
tibial artery
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
cerebellum
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gastrocnemius medialis
4
mesenchymal stem cell
4
monocyte
4
muscle of trunk
4
natural killer cell
4
neural progenitor cell
4
neutrophil
4
omental fat pad
4
pancreas
4
psoas muscle
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
blood cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
mammary gland epithelial cell
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
prostate gland
3
right cardiac atrium
3
skeletal muscle myoblast
3
stomach smooth muscle
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cartilage tissue
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
hepatocyte
2
hypothalamus
2
iPSC derived cell line
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
nucleus accumbens
2
parathyroid adenoma
2
rectum smooth muscle tissue
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
Organ
2
intestine
2
large intestine
2
musculature of body
Life stage
2
adult
2
unknown
Date released
3
September, 2022
1
August, 2017
1
January, 2022
1
May, 2021
Software used
4
chromhmm
1
limix
1
qTLtools
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
Showing 6 of 6 results
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Download
FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512UTN
released
Annotation file set
: Chromatin states for BSS01381 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR248RLM
released
Annotation file set
: Chromatin states for BSS01380 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786EWQ
released
Annotation file set
: neutrophil eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR792EUZ
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP