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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
5
candidate regulatory elements
5
target gene predictions
3
chromatin state
1
binding sites
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
1
RNA-seq
Available data
2
bed bed9
1
bed bed3+
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
21
heart
20
brain
20
stomach
18
A549
17
kidney
17
lung
16
islet of Langerhans
16
liver
16
small intestine
15
adrenal gland
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
11
right lung
11
thymus
10
adipose tissue
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
K562
7
macrophage
7
mature neutrophil
7
spleen
6
T cell
6
adipocyte
6
left cardiac atrium
6
lymphoblastoid cell line
6
mononuclear cell
6
subcutaneous adipose tissue
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
caudate nucleus
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
heart right ventricle
5
layer of hippocampus
5
ovary
5
regulatory T cell
5
sigmoid colon
5
substantia nigra
5
temporal lobe
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
mesenchymal stem cell
4
monocyte
4
natural killer cell
4
neural progenitor cell
4
neutrophil
4
pancreas
4
skin of body
4
testis
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
ascending aorta
3
blood cell
3
cerebellum
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
mammary gland epithelial cell
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
omental fat pad
3
prostate gland
3
putamen
3
retina
3
right atrium auricular region
3
right cardiac atrium
3
skeletal muscle myoblast
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
articular chondrocyte
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cartilage tissue
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
hepatocyte
2
iPSC derived cell line
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
parathyroid adenoma
2
right renal cortex interstitium
2
right renal pelvis
2
skin fibroblast
2
smooth muscle cell
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
Organ
4
pancreas
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
1
January, 2022
Software used
3
chromhmm
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
February, 2020
organ_slims!
musculature of body
Showing 4 of 4 results
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Download
FileSet
DSR684WDC
released
Annotation file set
: Chromatin states for BSS01407 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR892WTG
released
Annotation file set
: Chromatin states for BSS01406 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692ASX
released
Annotation file set
: pancreas eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR608480
released
Annotation file set
: ChromHMM 18-state model for Pancreas
Lab:
AMP-T2D consortium
Project:
AMP