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Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
target gene predictions
2
candidate regulatory elements
2
gene expression
2
variant allelic effects
1
caQTL
1
chromatin state
1
eQTL
Annotation Category
2
Gene expression levels
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
2
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
26
heart
24
kidney
20
brain
20
stomach
18
A549
18
epithelial cell of proximal tubule
17
hepatocyte
17
lung
17
muscle of arm
16
glomerular endothelial cell
15
adrenal gland
15
islet of Langerhans
15
monocyte
15
muscle of leg
15
small intestine
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
endothelial cell
11
cardiomyocytes
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
11
right kidney
11
right lung
11
thymus
10
B cell
10
H1-hESC
10
T-helper 1 cell
10
T-helper 17 cell
10
adipose tissue
10
liver
10
regulatory T cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
adipocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
8
left cardiac atrium
8
tibial nerve
7
CD8-positive, alpha-beta memory T cell
7
K562
7
body of pancreas
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic ductal cell
7
spinal cord
7
spleen
7
subcutaneous adipose tissue
6
T cell
6
T-helper 2 cell
6
caudate nucleus
6
coronary artery
6
embryonic stem cell
6
endothelial cell of umbilical vein
6
fibroblast
6
kidney interstitial cell
6
mononuclear cell
6
right atrium auricular region
6
temporal lobe
6
tibial artery
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
alternatively activated macrophage
5
aorta
5
ascending aorta
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
frontal cortex
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
mesangial cell
5
natural killer cell
5
ovary
5
retina
5
sigmoid colon
5
skeletal muscle myoblast
5
smooth muscle cell
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
angular gyrus
4
bone tissue
4
cerebellum
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
nephron progenitor
4
omental fat pad
4
pancreas
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
psoas muscle
4
right cardiac atrium
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thoracic aorta
4
thyroid gland
4
transverse colon
4
vascular associated smooth muscle cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HeLa-S3
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
Schwann cell
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
cardiac muscle cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
fibroblast of cardiac tissue
Life stage
1
embryonic
Date released
3
February, 2024
1
May, 2021
1
September, 2022
Software used
2
deltasvm
2
r
1
chromhmm
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
annotation_type!
target gene predictions
Showing 5 of 5 results
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Download
FileSet
DSR708TJP
released
Annotation file set
: Chromatin states for BSS01612 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656HJI
released
Annotation file set
: Gene expression annotation of smooth muscle cell_SMC ISL1-SMMHC+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR873DHZ
released
Annotation file set
: Cell type gene expression mean TPM and bw of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR475VRW
released
Annotation file set
: Variant allelic effects annotation of Smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR798NUZ
released
Annotation file set
: Variant allelic effects annotation of Smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP