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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
histone modifications
10
accessible chromatin
5
candidate regulatory elements
5
target gene predictions
4
binding sites
4
chromatin state
3
gene expression
2
differential activity
Annotation Category
4
cis-regulatory elements
3
Gene expression levels
Annotation type Category
RNA-seq
4
ChIP-seq
3
single cell RNA-seq
Available data
4
bed bed9
3
tsv
File set status
7
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
primary cell
Biosample term
20
heart
19
stomach
18
A549
16
brain
16
epithelial cell of proximal tubule
16
lung
16
muscle of arm
15
small intestine
14
adrenal gland
14
glomerular endothelial cell
14
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
liver
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adipocyte
7
adipose tissue
7
endothelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
left cardiac atrium
7
mature neutrophil
7
spinal cord
6
kidney interstitial cell
6
mononuclear cell
6
pancreatic ductal cell
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
alternatively activated macrophage
5
glomerular visceral epithelial cell
5
heart left ventricle
5
hepatocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
natural killer cell
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
T-helper 17 cell
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
heart right ventricle
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesangial cell
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
thyroid gland
4
transverse colon
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HeLa-S3
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T-helper 1 cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney resident macrophage
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
nephron progenitor
3
neurosphere
3
pancreatic acinar cell
3
pancreatic beta cell
3
pancreatic delta cell
3
regulatory T cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
temporal lobe
3
testis
3
tibial nerve
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
CD8-positive, alpha-beta T cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
NAMALWA cell
2
S-shaped body
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
angular gyrus
2
ascending aorta
2
breast epithelium
2
bronchial epithelial cell
2
cardiomyocytes (cardiac muscle cell)
2
cerebellum
2
coronary artery
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
Disease term
1
acute kidney failure
1
chronic kidney disease
Life stage
4
embryonic
3
adult
Date released
4
September, 2022
3
September, 2023
Software used
4
chromhmm
3
r
Lab
4
AMP-T2D consortium
3
KPMP
Project
4
AMP
3
KPMP
RFA
4
AMP
3
KPMP
annotation_type_category!
RNA-seq
files.file_type!
bigBed bed9
Showing 7 of 7 results
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Download
FileSet
DSR751JVG
released
Annotation file set
: Gene expression annotation of Monocyte of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR928DED
released
Annotation file set
: Gene expression annotation of Monocyte of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR059TMT
released
Annotation file set
: Gene expression annotation of Monocyte of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR048DMI
released
Annotation file set
: Chromatin states for BSS01372 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR866LQQ
released
Annotation file set
: Chromatin states for BSS01371 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR285WEC
released
Annotation file set
: Chromatin states for BSS01370 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR377DHA
released
Annotation file set
: Chromatin states for BSS00272 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP