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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ChIP-seq
1
RNA-seq
Available data
4
bed bed3+
2
bed bed9
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
7
adipocyte
5
embryonic stem cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
3
hepatocyte(AFP)
3
pancreatic ductal cell
2
endodermal cell
2
mesenchymal stem cell
2
muscle cell
2
smooth muscle cell
1
bipolar neuron
1
cardiac fibroblast
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
ectodermal cell
1
endothelial cell
1
excitatory neuron
1
hepatocyte
1
hippocampal neuron
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
lower motor neuron
1
mesendoderm
1
mesodermal cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
neural cell
1
neuron
1
olfactory neurosphere cell line
1
stem cell
1
trophoblast cell
Organ
7
connective tissue
Life stage
2
adult
1
unknown
Date released
4
August, 2017
2
September, 2022
1
February, 2021
Software used
6
chromhmm
1
r
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
month_released!
May, 2022
organ_slims!
breast
Showing 7 of 7 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP