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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
chromatin state
2
target gene predictions
1
histone modifications
0
gene expression
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
11
in vitro differentiated cells
3
tissue
Biosample term
24
heart
23
kidney
20
stomach
19
brain
17
lung
16
muscle of arm
15
adrenal gland
15
muscle of leg
15
small intestine
14
islet of Langerhans
14
placenta
13
large intestine
13
left lung
13
muscle of back
11
right lung
11
thymus
10
liver
10
right kidney
9
adipose tissue
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
7
left cardiac atrium
7
spinal cord
7
spleen
6
body of pancreas
6
heart right ventricle
6
subcutaneous adipose tissue
6
temporal lobe
6
tibial nerve
5
aorta
5
caudate nucleus
5
ovary
5
sigmoid colon
4
angular gyrus
4
ascending aorta
4
bone tissue
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
frontal cortex
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
omental fat pad
4
psoas muscle
4
retina
4
right atrium auricular region
4
right cardiac atrium
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial artery
4
transverse colon
3
Peyer's patch
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
mucosa of rectum
3
pancreas
3
stomach smooth muscle
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
Ammon's horn
2
Brodmann (1909) area 46
2
breast epithelium
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
prostate gland
2
putamen
2
rectum smooth muscle tissue
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
2
visceral abdominal adipose tissue
1
C1 segment of cervical spinal cord
1
amnion
1
amygdala
1
anterior cingulate cortex
1
aortic valve
1
arm bone
1
bladder
1
breast - mammary tissue
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
diencephalon
1
dorsolateral prefrontal cortex
1
embryonic facial prominence
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
femur
1
gastrocnemius medialis(Muscle - Skeletal)
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
hypothalamus
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
left ventricle myocardium
1
leg bone
1
medulla oblongata
1
metanephros
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
mitral valve
1
mucosa of stomach
1
nucleus accumbens
1
parietal lobe
1
pituitary
1
pons
1
prostate
1
pulmonary valve
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of body
1
small intestine - terminal Ileum
1
subcutaneous abdominal adipose tissue
1
superior temporal gyrus
1
thyroid
1
tricuspid valve
1
umbilical cord
1
whole blood
Organ
3
intestine
3
large intestine
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
Software used
3
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
biosample_term_name!
Transitional Principal-Intercalated Cell
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP