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Schema
Citing CMDGA
Clear Filters
Annotation type
9
candidate regulatory elements
5
target gene predictions
3
accessible chromatin
3
chromatin state
2
gene expression
1
eQTL
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
ChIP-seq
2
scRNA-seq
Available data
3
bed bed9
2
tsv
1
txt
File set status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
17
epithelial cell of proximal tubule
15
glomerular endothelial cell
15
monocyte
14
hepatocyte
13
common myeloid progenitor, CD34-positive
10
B cell
10
T-helper 1 cell
10
T-helper 17 cell
10
regulatory T cell
9
CD4-positive, alpha-beta memory T cell
9
endothelial cell
7
CD8-positive, alpha-beta memory T cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
6
T-helper 2 cell
6
glomerular visceral epithelial cell
6
kidney interstitial cell
6
mononuclear cell
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
natural killer cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
T cell
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
trophoblast cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
central memory CD8-positive, alpha-beta T cell
effector memory CD8-positive, alpha-beta T cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mammary gland epithelial cell
3
memory B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
osteoblast
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal cell
2
Kupffer cell
2
T follicular helper cell
2
astrocyte
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of prostate
2
erythroblast
2
fibroblast of breast
2
hepatic stellate cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
myoepithelial cell of mammary gland
2
naive B cel
2
neutrophil
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
renal cortical epithelial cell
2
renal vesicle
2
skeletal muscle fiber
2
skin fibroblast
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Schwann cell
1
activated pancreatic stellate cell
1
adipocyte
1
alpha-beta T cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
epithelial cell of esophagus
1
erythroid lineage cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
glial cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney granular cell
Life stage
5
adult
Date released
3
September, 2022
1
August, 2021
1
February, 2021
Software used
3
chromhmm
2
r
1
seurat
Lab
4
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
4
AMP
1
AMP2
biosample_term_name!
effector memory CD8-positive, alpha-beta T cell
Showing 5 of 5 results
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Download
FileSet
DSR099XCS
released
Annotation file set
: Chromatin states for BSS01355 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128FWG
released
Annotation file set
: Chromatin states for BSS01354 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR183MUZ
released
Annotation file set
: Chromatin states for BSS01353 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR962TNF
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for natural killer cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR725TSR
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver NK-likecells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP