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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
chromatin state
3
Fine-mapped variants
3
accessible chromatin
3
target gene predictions
2
variant allelic effects
1
eQTL
0
gene expression
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
4
bed bed9
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
23
heart
23
kidney
20
stomach
18
A549
18
brain
17
lung
16
epithelial cell of proximal tubule
16
muscle of arm
15
adrenal gland
15
hepatocyte
15
monocyte
15
muscle of leg
15
small intestine
14
glomerular endothelial cell
14
islet of Langerhans
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
11
right lung
11
thymus
10
B cell
10
H1-hESC
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell
10
regulatory T cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left kidney
9
liver
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
EndoC_BH1
8
adipocyte
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
K562
7
kidney loop of Henle thin ascending limb epithelial cell
7
left cardiac atrium
7
mature neutrophil
7
spinal cord
7
spleen
6
T-helper 2 cell
6
embryonic stem cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
pancreatic ductal cell
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
alternatively activated macrophage
5
aorta
5
body of pancreas
5
caudate nucleus
5
endothelial cell of umbilical vein
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
natural killer cell
5
ovary
5
sigmoid colon
5
subcutaneous adipose tissue
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
T cell
4
angular gyrus
4
ascending aorta
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesangial cell
4
mesenchymal stem cell
4
muscle of trunk
4
nephron progenitor
4
psoas muscle
4
right cardiac atrium
4
substantia nigra
4
testis
4
thyroid gland
4
tibial artery
4
tibial nerve
4
transverse colon
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HeLa-S3
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
frontal cortex
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary gland epithelial cell
3
memory B cell
3
mucosa of rectum
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
omental fat pad
3
osteoblast
3
pancreas
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
retina
Organ
4
limb
4
nerve
Life stage
4
adult
Date released
3
September, 2022
February, 2020
1
May, 2020
Software used
4
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
Connecting Tubule Intercalated Cell Type A
month_released!
February, 2020
Showing 4 of 4 results
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Download
FileSet
DSR677PFH
released
Annotation file set
: Chromatin states for BSS01842 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR344NSW
released
Annotation file set
: Chromatin states for BSS01841 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR764TDU
released
Annotation file set
: Chromatin states for BSS01840 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR205IDN
released
Annotation file set
: ChromHMM 18-state model for nerve tibial from 28 ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP