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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
5
candidate regulatory elements
5
target gene predictions
3
chromatin state
1
binding sites
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
2
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
22
heart
21
brain
20
stomach
18
kidney
16
lung
16
muscle of arm
16
placenta
15
muscle of leg
14
adrenal gland
13
left lung
13
muscle of back
12
thymus
11
liver
11
right lung
10
right kidney
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
7
spinal cord
6
adipose tissue
6
left cardiac atrium
6
spleen
6
temporal lobe
5
caudate nucleus
5
heart right ventricle
5
layer of hippocampus
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
endocrine pancreas
4
gastrocnemius medialis
4
islet of Langerhans
4
muscle of trunk
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
retina
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
upper lobe of left lung
3
ascending aorta
3
cerebellum
3
chorion membrane
3
cingulate gyrus
3
coronary artery
3
right cardiac atrium
3
stomach smooth muscle
3
thoracic aorta
3
tibial artery
2
Brodmann (1909) area 46
2
breast epithelium
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
germinal matrix
2
globus pallidus
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
midbrain
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
putamen
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
superior temporal gyrus
2
tongue
2
trophoblast
2
umbilical cord
2
urinary bladder
2
vagina
1
Ammon's horn
1
Brodmann (1909) area 9
1
amnion
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
arm bone
1
bed nucleus of stria terminalis
1
breast carcinoma
1
cardiogenic mesoderm
1
cartilage tissue
1
cerebellar cortex
1
circle of Willis
1
claustrum of brain
1
corneal epithelium
1
cortex of kidney
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
embryonic facial prominence
1
endometrium cancer
1
entorhinal cortex
1
femur
1
first pancreatic bud
1
frontal pole
1
gastroesophageal sphincter
1
germinal center
1
gyrus rectus
1
hypothalamus
1
inferior parietal cortex
1
kidney epithelium
1
leg bone
1
locus ceruleus
1
mammary gland
1
medial dorsal nucleus of thalamus
1
medulla oblongata
1
mid-frontal lobe
1
middle frontal gyrus
1
morula
1
mucosa of stomach
1
myelencephalon
1
nucleus accumbens
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pons
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prefrontal cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
respiratory system smooth muscle
1
right lobe of liver
1
septal nuclear complex
1
skeletal muscle
1
skin of body
1
skin of forearm
1
skin of prepuce of penis
1
smooth muscle tissue
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
temporal pole
1
thalamic complex
1
uterus
1
white matter
Organ
4
pancreas
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
1
February, 2021
Software used
3
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
intestine
Showing 4 of 4 results
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Download
FileSet
DSR684WDC
released
Annotation file set
: Chromatin states for BSS01407 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR892WTG
released
Annotation file set
: Chromatin states for BSS01406 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR782YGE
released
Annotation file set
: Histone modifications annotation for Pancreas Pancreas from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR608480
released
Annotation file set
: ChromHMM 18-state model for Pancreas
Lab:
AMP-T2D consortium
Project:
AMP