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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
in vitro differentiated cells
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
22
heart
21
brain
20
neural progenitor cell
20
stomach
19
A549
18
kidney
16
lung
16
muscle of arm
16
placenta
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
left lung
13
muscle of back
12
thymus
11
breast cancer cell
11
liver
11
right lung
10
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
10
right kidney
9
gastric cancer cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
K562
8
Rhabdomyosarcoma
8
mature neutrophil
8
neuroblastoma cell
8
spinal cord
7
HepG2
7
MCF-7
7
diffuse intrinsic pontine glioma
7
embryonic stem cell
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
adipocyte
6
adipose tissue
6
hESC cell
6
left cardiac atrium
6
liposarcoma
6
neuroblastoma cell line
6
spleen
6
squamous cell lung carcinoma
6
temporal lobe
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
CD8-positive, alpha-beta memory T cell
5
T-cell acute lymphoblastic leukemia
5
caudate nucleus
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
heart right ventricle
5
hepatocyte
5
layer of hippocampus
5
melanoma cell
5
mononuclear cell
5
natural killer cell
5
osteosarcoma
5
sigmoid colon
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
colonic mucosa
4
fibroblast of cardiac tissue
4
foreskin fibroblast
4
gastrocnemius medialis
4
islet of Langerhans
4
keratinocyte
4
mammary epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
retina
4
rhabdomyosarcoma cell
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
CD14-positive monocyte
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
Ewing sarcoma
3
GM12878
3
H1-hESC
3
HeLa-S3
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
acute myeloid leukemia
3
ascending aorta
3
cardiac muscle cell
3
cerebellum
3
cingulate gyrus
3
coronary artery
3
diffuse large B-cell lymphoma
3
duodenal mucosa
3
endocrine pancreas
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
lymphoblast
3
lymphoblastoid cell line
3
mammary gland epithelial cell
3
mucosa of rectum
3
neuronal stem cell
3
neurosphere
3
pancreatic ductal adenocarcinoma
3
regulatory T cell
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
thoracic aorta
3
tibial artery
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CMK
2
COLO205
2
Caco-2 cell
2
ESC derived cell line
2
GM12875
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HuH-7
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
OCI-LY1
2
OCI-LY7
2
PC-3
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Rh-4 cell
2
SK-MEL-5
2
SK-N-MC
2
SK-N-SH
2
SW480
2
T-helper 1 cell
2
T-helper 2 cell
T47D
2
Th1 cell
2
VCaP cell
2
WERI-Rb-1
2
acute myeloid leukemia cell
2
breast epithelium
2
bronchial epithelial cell
2
chorion membrane
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
dermis blood vessel endothelial cell
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroblast
2
erythroid progenitor cell
2
esophageal carcinoma
esophagus
Organ
6
connective tissue
Life stage
1
adult
unknown
Date released
4
August, 2017
1
February, 2021
1
September, 2022
Software used
5
chromhmm
1
macs
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
RFA
6
AMP
biosample_term_name!
T47D
esophagus
relevant_life_stage!
unknown
Showing 6 of 6 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP