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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
18
candidate regulatory elements
5
accessible chromatin
3
gene expression
2
chromatin state
2
variant allelic effects
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
2
bigBed bed9
1
bed bed3+
File set status
2
released
1
revoked
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
16
neural progenitor cell
11
breast cancer cell
9
gastric cancer cell
8
Rhabdomyosarcoma
8
mature neutrophil
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
embryonic stem cell
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
hESC cell
6
liposarcoma
6
neuroblastoma cell line
6
squamous cell lung carcinoma
5
CD14-positive, CD16-negative classical monocyte
5
T-cell acute lymphoblastic leukemia
5
adipocyte
5
brain
5
left cardiac atrium
5
melanoma cell
5
osteosarcoma
4
alternatively activated macrophage
4
heart left ventricle
4
hepatocyte
4
islet of Langerhans
4
keratinocyte
4
kidney
4
liver
4
mammary epithelial cell
4
rhabdomyosarcoma cell
4
temporal lobe
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
acute myeloid leukemia
3
diffuse large B-cell lymphoma
3
endothelial cell of umbilical vein
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
heart
3
inflammatory macrophage
3
lymphoblast
3
lymphoblastoid cell line
3
neuronal stem cell
3
pancreatic ductal adenocarcinoma
2
B cell
2
B-lymphocyte
2
COLO205
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HS-SY-2 cell
2
HepG2
2
JVM-2 cell
2
Jurkat
2
K562
2
KARPAS-422 cell
2
MCF-7
2
Mantle cell lymphoma
2
RS4-11 cell
2
Rh-4 cell
2
Th1 cell
2
U-266 cell
2
Z-138
2
acute myeloid leukemia cell
2
angular gyrus
2
aorta
2
bronchial epithelial cell
2
cardiac muscle cell
2
caudate nucleus
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
colonic mucosa
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroblast
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
glioblastoma multiforme cancer stem cell
2
heart right ventricle
2
hematopoietic cell
2
hepatic stellate cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
layer of hippocampus
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
metastatic melanoma
2
multiple myeloma cell line
2
muscle of leg
2
natural killer cell
2
osteoblast
2
pancreas
2
pancreatic cell line
2
pancreatic ductal cell
2
placenta
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
right cardiac atrium
2
skeletal muscle myoblast
2
substantia nigra
2
synovial sarcoma cell
2
tracheal epithelial cell
2
triple-negative breast cancer
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
1
143B
1
22Rv1
1
501A
1
5637
1
697 cell
1
769-P cell
1
76NF2V cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG08470 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AGS cell
1
ALL-SIL cell
1
ARH-77 cell
1
AU565 cell
1
Adipose stromal cell
1
AsPC-1 cell
1
B-cell lymphoma cell
1
BCBL-1 cell
1
BE(2)-C
1
BEAS-2B cell
1
BG03
1
BGC-823 cell
1
BHY cell
1
BICR 31
1
BJ cell
1
BL-2 cell
1
BT-474 cell
1
BT-549 cell
1
Barrett's epithelial cell line
1
Barrett's esophagus
1
Brodmann (1909) area 9
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-33 cell
1
CAL-51 cell
1
CCRF-CEM cell
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive helper T cell
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHP-134 cell
1
CHP-212 cell
1
CMK
1
COLO 679 cell
1
COLO 741 cell
1
COLO-320 cell
1
COR-L311 cell
1
CTV-1 cell
1
CaSki cell
1
Caco-2 cell
1
Caki-1 cell
1
Calu-1 cell
1
Calu-3 cell
1
Capan-1 cell
1
Capan-2 cell
1
Crypt of Lieberkuhn
1
CyT49
1
D283 Med cell
1
D341 Med cell
1
DG-75 cell
1
DK cell
1
DLD-1 cell
1
DMS 114 cell
1
DMS 53 cell
1
DMS 79 cell
1
DND-41 cell
1
DOHH-2 cell
1
DU 145 cell
1
Daudi
1
Detroit562
1
EAhy 926 cell
Organ
3
heart
Life stage
1
embryonic
1
fetal
Date released
September, 2022
1
April, 2019
1
February, 2021
1
May, 2020
Software used
2
chromhmm
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
June, 2021
September, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR231NZC
released
Annotation file set
: Histone modifications annotation for Adipocyte Fetal_Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR552DTP
released
Annotation file set
: ChromHMM 15-state model for fetal hearts from ENCODE ChIP-seq data. ROADMAP fetal heart Annotation
Lab:
AMP-T2D consortium
Project:
AMP