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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
87
histone modifications
19
accessible chromatin
15
gene expression
5
target gene predictions
eQTL
2
binding sites
2
chromatin state
2
hQTL
1
candidate regulatory elements
1
meQTL
1
sQTL
Annotation Category
5
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
1
bed bed9
1
bed bed9+
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
cell line
2
primary cell
Biosample term
58
HeLa-S3
41
H1-hESC
41
heart
40
stomach
37
A549
34
brain
33
lung
32
muscle of arm
32
small intestine
31
adrenal gland
30
K562
30
kidney
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
19
liver
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
15
heart left ventricle
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
adipocyte
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
GM12878
10
heart right ventricle
10
ovary
10
pituitary stalk
9
H9
9
body of pancreas
9
endothelial cell of umbilical vein
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
aorta
8
chorionic villus
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
keratinocyte
8
lymphocyte
8
natural killer cell
8
pancreas
8
smooth muscle cell
7
caudate nucleus
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
T-helper 2 cell
6
angular gyrus
6
chorion membrane
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
mucosa of rectum
5
neutrophil
5
right cardiac atrium
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
germinal matrix
3
iPS DF 19.11
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
type B pancreatic cell
3
uterus
Disease term
2
large-cell immunoblastic lymphoma
Life stage
2
adult
1
unknown
Date released
2
May, 2021
2
September, 2022
1
January, 2021
1
May, 2020
1
May, 2022
Software used
2
abc
2
chromhmm
1
chicago
1
cicero
1
r
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
6
AMP
1
T1D
RFA
6
AMP
1
T1D
annotation_type!
eQTL
biosample_term_name!
T-helper 2 cell
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR632PDZ
released
Annotation file set
: Target gene predictions for BSS01065 KARPAS-422 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR706YNV
released
Annotation file set
: Chromatin states for BSS01065 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308LDV
released
Annotation file set
: Chromatin state of KARPAS-422 cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR093BCO
released
Annotation file set
: enhancer-gene predicton of Karpas-422-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP