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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
accessible chromatin
3
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
eQTL
2
variant allelic effects
1
caQTL
1
gene expression
Annotation Category
3
Target gene links
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
5
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
58
HeLa-S3
43
heart
41
H1-hESC
40
stomach
37
A549
35
brain
33
lung
33
muscle of arm
32
small intestine
31
adrenal gland
31
kidney
30
K562
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
21
right kidney
20
hematopoietic multipotent progenitor cell
19
HFFc6
19
liver
19
renal cortex interstitium
19
renal pelvis
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
heart left ventricle
15
adipose tissue
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
spleen
13
adipocyte
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
heart right ventricle
11
pericyte cell
10
GM12878
10
T cell
10
body of pancreas
10
endothelial cell of umbilical vein
10
fibroblast
10
ovary
10
pituitary stalk
10
smooth muscle cell
9
H9
9
endothelial cell
9
gastrocnemius medialis
9
keratinocyte
9
muscle of trunk
9
neural progenitor cell
9
pancreas
9
thyroid gland
9
tibial nerve
9
transverse colon
8
aorta
8
caudate nucleus
8
chorionic villus
8
coronary artery
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
hepatocyte
8
left cardiac atrium
8
lymphocyte
8
mammary gland epithelial cell
8
natural killer cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
macrophage
7
mature neutrophil
7
mesenchymal stem cell
7
regulatory T cell
7
retina
7
skeletal muscle myoblast
7
temporal lobe
7
tibial artery
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
ascending aorta
6
chorion membrane
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
right atrium auricular region
6
skeletal muscle tissue
6
testis
6
thoracic aorta
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
alternatively activated macrophage
5
astrocyte
5
breast epithelium
5
cardiac muscle cell
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
frontal cortex
5
islet of Langerhans
5
left renal cortex interstitium
5
left renal pelvis
5
mucosa of rectum
5
neutrophil
5
pancreatic delta cell
5
right cardiac atrium
5
right renal cortex interstitium
5
right renal pelvis
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of esophagus
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
iPSC derived cell line
4
inflammatory macrophage
4
kidney tubule cell
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
parathyroid adenoma
4
prostate gland
4
skeletal muscle satellite cell
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
basal cell
3
bipolar neuron
3
choroid plexus epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
epithelial cell of proximal tubule
Organ
8
artery
8
blood vessel
8
heart
8
vasculature
Life stage
5
adult
Date released
4
September, 2022
2
May, 2020
1
May, 2019
1
May, 2021
Software used
3
chromhmm
2
deltasvm
2
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
ACHN
Showing 8 of 8 results
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Download
FileSet
DSR422SRD
released
Annotation file set
: Target gene predictions for BSS00243 coronary artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035MSO
released
Annotation file set
: Target gene predictions for BSS00242 coronary artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823JJW
released
Annotation file set
: Chromatin states for BSS00243 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR679HDX
released
Annotation file set
: Chromatin states for BSS00242 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR233ZIX
released
Annotation file set
: enhancer-gene predicton of coronary_artery-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR402HCQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985HJQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR716IKT
released
Annotation file set
: ChromHMM 4-state model for coronary artery from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP