Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
3
accessible chromatin
3
gene expression
2
target gene predictions
1
chromatin state
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
1
bed bed9+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
57
HeLa-S3
41
heart
40
H1-hESC
38
stomach
A549
34
brain
33
lung
32
muscle of arm
31
small intestine
30
kidney
29
K562
29
adrenal gland
28
muscle of leg
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
24
thymus
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
liver
18
renal cortex interstitium
18
renal pelvis
17
B cell
15
heart left ventricle
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
13
adipose tissue
13
spleen
12
mononuclear cell
11
psoas muscle
11
sigmoid colon
10
MCF-7
10
heart right ventricle
10
trophoblast cell
9
GM12878
9
neural progenitor cell
9
ovary
8
CD14-positive monocyte
8
H9
8
T cell
8
adipocyte
8
aorta
8
body of pancreas
8
chorionic villus
8
endocrine pancreas
8
endothelial cell of umbilical vein
8
foreskin keratinocyte
8
gastrocnemius medialis
8
lymphocyte
8
muscle of trunk
8
thyroid gland
8
transverse colon
7
caudate nucleus
7
fibroblast of lung
7
layer of hippocampus
7
left cardiac atrium
7
mature neutrophil
7
natural killer cell
7
pancreas
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
chorion membrane
6
embryonic stem cell
6
endometrium adenocarcinoma
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
immortal human breast epithelial cell line cell
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
alternatively activated macrophage
5
ascending aorta
5
cingulate gyrus
5
colonic mucosa
5
coronary artery
5
duodenal mucosa
5
esophagus
5
keratinocyte
5
mucosa of rectum
5
neutrophil
5
right cardiac atrium
5
skeletal muscle myoblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
breast epithelium
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of prostate
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
frontal cortex
4
hepatocyte
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skin fibroblast
4
tongue
4
urinary bladder
4
vagina
3
Ammon's horn
3
CD8-positive, alpha-beta T cell
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
KARPAS-422 cell
3
cardiomyocytes (cardiac muscle cell)
3
erythroblast
3
germinal matrix
3
mesendoderm
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
rectum smooth muscle tissue
3
skeletal muscle satellite cell
2
8988T
2
A172
2
A673
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
Life stage
1
child
Date released
1
January, 2021
1
May, 2020
1
May, 2022
Software used
1
chicago
1
chromhmm
1
cicero
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
annotation_type_category!
ATAC-seq
biosample_term_name!
A549
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP