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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
gene expression
5
candidate regulatory elements
3
chromatin state
2
accessible chromatin
0
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
3
bed bed9+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
36
A549
20
common myeloid progenitor, CD34-positive
18
hematopoietic multipotent progenitor cell
12
B cell
12
K562
12
adipose tissue
12
adrenal gland
11
liver
10
CD8-positive, alpha-beta memory T cell
10
MCF-7
10
mononuclear cell
10
stomach
8
body of pancreas
8
gastrocnemius medialis
8
sigmoid colon
8
spleen
8
thyroid gland
8
transverse colon
7
aorta
7
psoas muscle
7
tibial nerve
6
CD14-positive monocyte
6
CD4-positive, alpha-beta memory T cell
6
HeLa-S3
6
Peyer's patch
6
T cell
6
angular gyrus
6
caudate nucleus
6
endocrine pancreas
6
endometrium adenocarcinoma
6
heart left ventricle
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
natural killer cell
6
ovary
6
temporal lobe
6
upper lobe of left lung
5
ascending aorta
5
coronary artery
5
kidney
5
mature neutrophil
5
pancreas
5
thoracic aorta
5
tibial artery
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
T-helper 1 cell
4
T-helper 2 cell
4
T47D
4
breast epithelium
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
fibroblast of breast
4
frontal cortex
4
kidney tubule cell
4
lower leg skin
4
mammary gland epithelial cell
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive T cell
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
regulatory T cell
4
right atrium auricular region
4
right cardiac atrium
4
skeletal muscle tissue
4
small intestine
4
stomach smooth muscle
4
substantia nigra
4
testis
4
vagina
3
CD4-positive, alpha-beta T cell
3
GM12878
3
heart right ventricle
3
inflammatory macrophage
3
mesenchymal stem cell
3
skeletal muscle satellite cell
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
Ammon's horn
2
C4-2B
2
CD14-positive, CD16-negative classical monocyte
2
COLO829
2
Caco-2 cell
2
Caki2
2
DOHH2
2
GM04503
2
GM04504
2
GM10248
2
GM10266
2
GM12875
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HPDE6-E6E7
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HuH-7
2
HuH-7.5
2
KARPAS-422 cell
2
KBM-7
2
KMS-11
2
LHCN-M2
2
LoVo cell
2
Loucy
2
M059J
2
MM.1S
2
NB4
2
NCI-H226 cell
2
NCI-H929
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
RWPE2
2
SJSA1
2
SK-MEL-5
2
SU-DHL-6
2
SW480
2
VCaP cell
2
adipocyte
2
alternatively activated macrophage
2
bipolar neuron
2
cardiomyocytes (cardiac muscle cell)
2
cerebellar cortex
2
dermis blood vessel endothelial cell
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of lung
2
gastroesophageal sphincter
2
globus pallidus
2
heart
2
hepatic stellate cell
2
iPS-11a
2
iPS-15b
2
iPS-18a
2
iPS-18c
2
iPS-20b
2
iPS-NIHi11
2
iPS-NIHi7
2
inferior parietal cortex
2
kidney glomerular epithelial cell
2
luminal epithelial cell of mammary gland
2
lung
2
lymphocyte of B lineage (iPSC)
2
mammary stem cell
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of stomach
2
occipital lobe
2
olfactory neurosphere cell line
2
pons
2
putamen
2
rectum smooth muscle tissue
2
renal cell carcinoma
2
right lobe of liver
2
skeletal muscle myoblast
2
superior temporal gyrus
2
urinary bladder
2
uterus
1
cell
1
islet of Langerhans
1
mature eosinophil
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
Life stage
3
adult
Date released
3
May, 2022
Software used
3
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
colon epithelial cell
Showing 3 of 3 results
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Download
FileSet
DSR672PEO
released
Annotation file set
: Chromatin state of CD4-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR535ORX
released
Annotation file set
: Chromatin state of CD4-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR725FKE
released
Annotation file set
: Chromatin state of CD4-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP