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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
5
accessible chromatin
5
target gene predictions
3
gene expression
1
chromatin state
Annotation Category
5
Target gene links
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
1
bed bed9+
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
tissue
6
primary cell
Biosample term
58
HeLa-S3
41
H1-hESC
37
A549
30
K562
27
common myeloid progenitor, CD34-positive
23
CD14-positive monocyte
20
hematopoietic multipotent progenitor cell
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
14
CD8-positive, alpha-beta memory T cell
12
adipocyte
12
mononuclear cell
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
GM12878
10
pituitary stalk
9
H9
9
endothelial cell of umbilical vein
9
neural progenitor cell
8
T cell
8
fibroblast of lung
8
foreskin keratinocyte
8
keratinocyte
8
lymphocyte
8
natural killer cell
8
smooth muscle cell
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
mammary gland epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
regulatory T cell
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
skeletal muscle myoblast
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
alternatively activated macrophage
5
astrocyte
5
colon epithelial cell
5
epithelial cell of prostate
5
foreskin fibroblast
5
neutrophil
5
skin fibroblast
4
22Rv1
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
erythroblast
4
fibroblast
4
fibroblast of breast
4
iPSC derived cell line
4
inflammatory macrophage
4
kidney tubule cell
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
muscle cell
4
myoepithelial cell of mammary gland
4
pancreatic delta cell
4
skeletal muscle satellite cell
3
A673
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
ESC derived cell line
2
G401
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM23248
2
GM23338
2
H4
2
H54
2
HEK293
2
HEK293T
2
HK-2 cell
2
HL-60
2
HPDE6-E6E7
2
HS-27A
2
HS-5
2
HT1080
2
HTR-8/Svneo
2
HUES48
2
HUES6
2
HUES64
2
HuH-7
2
HuH-7.5
2
Jurkat
2
KBM-7
2
KMS-11
2
KOPT-K1
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
Loucy
2
M059J
2
MCF 10A cell
2
MG63
2
NB4
2
NCI-H226 cell
2
NCI-H460 cell
2
NCI-H929
2
NT2-D1 cell
2
OCI-LY1
2
OCI-LY3
2
PC-3
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
RWPE2
2
SJCRH30
2
SJSA1
Life stage
1
child
Date released
2
May, 2021
1
January, 2021
1
May, 2020
1
May, 2022
1
November, 2021
Software used
3
abc
1
chicago
1
chromhmm
1
cicero
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
ENCODE3
1
T1D
biosample_term_name!
trophoblast
biosample_type!
tissue
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP