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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
histone modifications
3
binding sites
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
58
HeLa-S3
41
H1-hESC
40
heart
40
stomach
37
A549
34
brain
32
lung
32
muscle of arm
31
small intestine
30
K562
30
adrenal gland
30
kidney
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
24
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
13
adipose tissue
13
heart left ventricle
13
spleen
12
adipocyte
12
mononuclear cell
12
trophoblast cell
11
MCF-7
11
pericyte cell
11
sigmoid colon
10
GM12878
10
pituitary stalk
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
ovary
9
psoas muscle
9
thyroid gland
9
transverse colon
8
T cell
8
chorionic villus
8
endocrine pancreas
8
endothelial cell of umbilical vein
8
fibroblast of lung
8
foreskin keratinocyte
8
heart right ventricle
8
keratinocyte
8
lymphocyte
8
natural killer cell
8
neural progenitor cell
8
smooth muscle cell
7
caudate nucleus
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
aorta
6
chorion membrane
6
coronary artery
6
dendritic cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
pancreas
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
SK-N-SH
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
embryonic stem cell
5
epithelial cell of prostate
5
foreskin fibroblast
5
mucosa of rectum
5
neutrophil
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
erythroblast
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right cardiac atrium
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
tongue
4
trophoblast
4
urinary bladder
4
vagina
3
A673
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
germinal matrix
3
iPS DF 19.11
3
mesendoderm
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
Disease term
2
hepatocellular carcinoma
Organ
4
liver
Life stage
2
child
Date released
2
September, 2022
1
August, 2017
March, 2020
1
May, 2021
Software used
2
chromhmm
1
abc
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
files.file_type!
bigBed narrowPeak
month_released!
March, 2020
Showing 4 of 4 results
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Download
FileSet
DSR306YJJ
released
Annotation file set
: Target gene predictions for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR533TVB
released
Annotation file set
: Chromatin states for BSS00558 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP