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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
gene expression
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
27
common myeloid progenitor, CD34-positive
23
CD14-positive monocyte
18
B cell
18
CD4-positive, alpha-beta memory T cell
14
CD8-positive, alpha-beta memory T cell
12
mononuclear cell
9
endothelial cell of umbilical vein
9
trophoblast cell
8
T cell
8
fibroblast of lung
8
foreskin keratinocyte
8
natural killer cell
7
fibroblast of dermis
7
mature neutrophil
7
regulatory T cell
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
fibroblast of cardiac tissue
6
keratinocyte
6
mammary gland epithelial cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
CD8-positive, alpha-beta T cell
5
alternatively activated macrophage
5
epithelial cell of prostate
5
neutrophil
5
skeletal muscle myoblast
4
bronchial epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
erythroblast
4
fibroblast of breast
4
inflammatory macrophage
4
kidney tubule cell
4
myoepithelial cell of mammary gland
4
skin fibroblast
3
astrocyte
3
foreskin fibroblast
3
hepatocyte
3
osteoblast
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
skeletal muscle satellite cell
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
foreskin melanocyte
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
luminal epithelial cell of mammary gland
2
lung microvascular endothelial cell
2
macrophage
2
mammary epithelial cell
2
mammary stem cell
2
megakaryocyte
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
non-pigmented ciliary epithelial cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pericyte cell
2
pulmonary artery endothelial cell
2
regular cardiac myocyte
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
stromal cell of bone marrow
1
B cell, CD19-positive
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD56-positive, CD161-positive immature natural killer cell
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
cardiac muscle cell
1
conventional dendritic cell
1
endothelial cell
1
fibroblast of arm
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
memory B cell
1
mesenchymal stem cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic A cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
type B pancreatic cell
Life stage
2
unknown
Date released
2
September, 2022
1
May, 2021
Software used
1
abc
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
lab.title!
Bing Ren, UCSD
month_released!
February, 2020
Showing 3 of 3 results
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Download
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP