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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
candidate regulatory elements
7
binding sites
4
histone modifications
3
accessible chromatin
2
chromatin state
2
eQTL
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
pCHi-C
Available data
2
bed bed9
2
bigBed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
Biosample term
52
HeLa-S3
39
H1-hESC
19
HFFc6
18
K562
15
CD14-positive monocyte
10
pituitary stalk
9
pericyte cell
8
GM12878
8
adipocyte
7
H9
7
endothelial cell
7
mature neutrophil
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
dendritic cell
6
embryonic stem cell
6
lymphocyte
6
olfactory receptor cell
6
smooth muscle cell
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
endothelial cell of umbilical vein
5
heart left ventricle
5
left cardiac atrium
5
liver
4
CyT49
4
HUES8
4
aorta
4
erythroblast
4
fibroblast
4
heart right ventricle
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
keratinocyte
4
macrophage
4
pancreas
4
psoas muscle
3
HepG2
3
adrenal gland
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
heart
3
mesenchymal stem cell
3
monocyte
3
muscle of leg
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
right cardiac atrium
3
temporal lobe
3
thymus
3
type B pancreatic cell
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
ESC derived cell line
2
HCT116
2
Jurkat
2
KARPAS-422 cell
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
angular gyrus
2
blood vessel smooth muscle cell
2
brain
2
coronary artery
2
cortical cell of adrenal gland
2
enteric smooth muscle cell
2
fibroblast of lung
2
gabaergic neuron
2
glutamatergic neuron
2
hepatocyte
2
kidney
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
mammary epithelial cell
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
ovary
2
sigmoid colon
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
small intestine
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
trophoblast cell
2
type II pneumocyte
1
A549
1
A673
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BL-2 cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD56-positive, CD161-positive immature natural killer cell
1
DG-75 cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
JVM-2 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
SUDHL5
1
U-266 cell
1
Z-138
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alveolar macrophage
1
ascending aorta
1
basal cell
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
body of pancreas
1
breast epithelium
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
caudate nucleus
1
cell
1
ciliated cell
1
cingulate gyrus
1
club cell
1
colon goblet cell
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
dorsolateral prefrontal cortex
1
duodenal mucosa
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
esophagus
1
fat cell
1
fibroblast cell line
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastric (mucosa of stomach)
1
gastrocnemius medialis
1
germinal matrix
1
granular cell of epidermis
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intestinal tuft cell
1
large intestine
1
layer of hippocampus
1
lung
1
luteal cell
Organ
2
brain
Life stage
2
fetal
Date released
September, 2022
1
January, 2020
1
March, 2020
1
November, 2019
Software used
2
chromhmm
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR362JPD
released
Annotation file set
: A target gene prediction annotation in Human Fibroblasts of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833MWK
released
Annotation file set
: ChromHMM 15-state model for fetal brain male from ENCODE ChIP-seq data. ROADMAP fetal brain male
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073PLY
released
Annotation file set
: ChromHMM 15-state model for fetal brain female from ENCODE ChIP-seq data. ROADMAP fetal brain female
Lab:
AMP-T2D consortium
Project:
AMP