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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
17
accessible chromatin
10
gene expression
5
target gene predictions
4
candidate regulatory elements
3
chromatin state
3
differential activity
3
histone modifications
2
variant allelic effects
1
binding sites
1
eQTL
Annotation Category
5
Target gene links
3
cis-regulatory elements
Annotation type Category
5
ChIP-seq
3
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
5
tissue
3
primary cell
Biosample term
58
HeLa-S3
38
H1-hESC
37
A549
30
K562
27
common myeloid progenitor, CD34-positive
23
CD14-positive monocyte
20
hematopoietic multipotent progenitor cell
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
15
adrenal gland
15
liver
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
stomach
12
adipocyte
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
spleen
11
MCF-7
11
heart left ventricle
11
pericyte cell
10
GM12878
10
pituitary stalk
9
body of pancreas
9
endothelial cell of umbilical vein
9
gastrocnemius medialis
9
thyroid gland
9
transverse colon
8
T cell
8
aorta
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
heart right ventricle
8
keratinocyte
8
lymphocyte
8
natural killer cell
8
ovary
8
pancreas
8
small intestine
7
H9
7
caudate nucleus
7
endothelial cell
7
fibroblast of dermis
7
layer of hippocampus
7
mammary gland epithelial cell
7
mature neutrophil
7
regulatory T cell
7
temporal lobe
7
tibial nerve
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
heart
6
immortal human breast epithelial cell line cell
6
naive T cell
6
olfactory receptor cell
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
smooth muscle cell
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
kidney
5
left cardiac atrium
5
lung
5
mesenchymal stem cell
5
mucosa of rectum
5
neutrophil
5
right cardiac atrium
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
thymus
5
tibial artery
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
hepatocyte
4
iPSC derived cell line
4
inflammatory macrophage
4
islet of Langerhans
4
kidney tubule cell
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
skeletal muscle satellite cell
4
testis
4
vagina
3
A673
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
HAP-1
3
HT-29
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELR
2
ESC derived cell line
2
G401
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
Organ
5
kidney
3
epithelium
3
pancreas
Life stage
embryonic
5
adult
Date released
4
September, 2022
1
January, 2021
1
May, 2019
1
May, 2021
1
November, 2021
Software used
3
chromhmm
2
abc
2
r
1
cicero
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
6
AMP
1
ENCODE
1
T1D
RFA
6
AMP
1
ENCODE3
1
T1D
biosample_term_name!
left lung
relevant_life_stage!
embryonic
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR152MJL
released
Annotation file set
: Target gene predictions for BSS01097 kidney from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR638FWY
released
Annotation file set
: Target gene predictions for BSS01096 kidney from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR205PVO
released
Annotation file set
: Chromatin states for BSS01097 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181LMN
released
Annotation file set
: Chromatin states for BSS01096 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410PLO
released
Annotation file set
: Target gene predictions of Pancreatic Acinar Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR328CUT
released
Annotation file set
: enhancer-gene predicton of pancreatic-acinar-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR521RYC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of acinar
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR394RHU
released
Annotation file set
: ChromHMM 12-state model for adult kidney from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP