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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
2
chromatin state
2
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
1
pCHi-C
1
snATAC-seq
Available data
3
bed bed3+
1
bed bed9
1
bed bed9+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
2
megakaryocyte
2
stromal cell of bone marrow
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
Organ
175
epithelium
154
musculature of body
152
kidney
lung
148
brain
132
intestine
126
connective tissue
112
embryo
100
heart
99
limb
84
bodily fluid
80
blood
80
large intestine
79
skin of body
69
extraembryonic component
64
vasculature
62
uterus
61
pancreas
54
stomach
53
blood vessel
43
small intestine
38
liver
35
adrenal gland
34
mammary gland
33
placenta
31
bone element
28
prostate gland
26
ureter
25
thymus
23
adipose tissue
21
penis
19
gonad
18
eye
17
esophagus
17
lymph node
17
spinal cord
16
artery
14
spleen
11
lymphoid tissue
11
ovary
10
pituitary gland
10
thyroid gland
9
vein
8
mouth
8
testis
7
nerve
6
skeleton
5
bone marrow
5
breast
5
bronchus
5
lymphatic vessel
5
urinary bladder
4
tongue
4
vagina
2
nose
Life stage
2
unknown
1
child
Date released
2
September, 2022
1
January, 2021
1
May, 2020
1
May, 2022
Software used
2
chromhmm
1
chicago
1
cicero
1
r
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
organ_slims!
lung
Showing 5 of 5 results
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Download
FileSet
DSR928GVV
released
Annotation file set
: Target gene predictions for BSS01661 stromal cell of bone marrow from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR315JBI
released
Annotation file set
: Chromatin states for BSS01661 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180LXT
released
Annotation file set
: Chromatin state of CD34-negative, CD41-positive, CD42-positive megakaryocyte cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR992TVD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
Lab:
AMP-T2D consortium
Project:
AMP