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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
32
candidate regulatory elements
19
target gene predictions
5
accessible chromatin
4
chromatin state
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
20
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
7
mature neutrophil
6
fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
adipocyte
5
embryonic stem cell
4
alternatively activated macrophage
4
islet of Langerhans
3
CD4-positive, alpha-beta T cell
3
enterocyte
3
inflammatory macrophage
3
macrophage
3
myofibroblast cell
2
cardiac fibroblast
2
muscle of leg
2
ESC derived cell line
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
basal cell
2
cardiac muscle cell
2
caudate nucleus
2
coronary artery
2
endothelial cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
erythroblast
2
goblet cell
2
heart
2
heart left ventricle
2
hepatocyte
2
keratinocyte
2
liver
2
pancreas
2
right atrium auricular region
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
smooth muscle cell
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
BL-2 cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
DG-75 cell
1
EndoC_BH1
1
GM12878
1
H1-hESC
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
JVM-2 cell
1
K562
1
KARPAS-422 cell
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
SUDHL5
1
Satellite Cells, Skeletal Muscle
1
U-266 cell
1
Z-138
1
adipose tissue
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
cingulate gyrus
1
colonic mucosa
1
cortical cell of adrenal gland
1
duodenal mucosa
1
epithelial cell of proximal tubule
1
fibroblast of lung
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
hepatic stellate cell
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
layer of hippocampus
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mature eosinophil
1
medulla oblongata
1
mesothelial cell
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
mucosa of rectum
1
muscle of arm
1
naive t cell
1
occipital lobe
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pons
1
purified protein and synthetic DNA oligo binding assay
1
putamen
1
rectum smooth muscle tissue
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
substantia nigra
1
superior temporal gyrus
1
temporal lobe
1
thoracic aorta
1
thyroid follicular cell
1
type II pneumocyte
Organ
5
connective tissue
Date released
4
August, 2017
1
February, 2024
Software used
4
chromhmm
1
deltasvm
Lab
4
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
5
AMP
RFA
5
AMP
assembly!
GRCh38
biosample_term_name!
sigmoid colon
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP