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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
target gene predictions
6
accessible chromatin
6
chromatin state
4
candidate regulatory elements
2
gene expression
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
6
ChIP-seq
1
snATAC-seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
22
heart
19
brain
17
muscle of arm
15
lung
15
muscle of leg
14
kidney
14
placenta
14
stomach
13
large intestine
13
left lung
13
muscle of back
13
small intestine
11
right kidney
11
right lung
11
thymus
10
renal cortex interstitium
10
renal pelvis
9
left kidney
8
adrenal gland
7
left cardiac atrium
7
spinal cord
6
CD4-positive, alpha-beta memory T cell
6
adipocyte
6
endothelial cell of umbilical vein
6
fibroblast
6
heart left ventricle
5
embryonic stem cell
5
heart right ventricle
5
trophoblast cell
4
chorionic villus
4
foreskin keratinocyte
4
hepatocyte
4
keratinocyte
4
liver
4
muscle of trunk
4
neural progenitor cell
4
retina
3
CD14-positive, CD16-negative classical monocyte
3
T cell
3
T-helper 17 cell
3
cardiac muscle cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
enterocyte
3
epithelial cell of esophagus
3
fibroblast of lung
3
islet of Langerhans
3
left renal cortex interstitium
3
left renal pelvis
3
macrophage
3
myofibroblast cell
3
neurosphere
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle myoblast
3
smooth muscle cell
2
muscle of leg
2
22Rv1
2
B cell
2
CD8-positive, alpha-beta memory T cell
2
ESC derived cell line
2
H1-hESC
2
HepG2
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
alternatively activated macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
coronary artery
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroblast
2
eye
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
foreskin fibroblast
2
germinal matrix
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
limb
2
mammary gland epithelial cell
2
mature neutrophil
2
neutrophil
2
renal cortical epithelial cell
2
right atrium auricular region
2
skeletal muscle cell
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
spleen
2
subcutaneous adipose tissue
2
tibial artery
2
tongue
2
trophoblast
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
A673
1
AG04449 cell
1
AG04450 cell
1
Adipose SGBS cell line (adipocyte)
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
CD14-positive monocyte
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
CWRU1
1
DG-75 cell
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
EndoC_BH1
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18507
1
H7-hESC
1
H9
1
HEK293
1
HEK293T
1
HK-2 cell
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
JVM-2 cell
1
K562
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
Liver fetal (hepatocyte)
1
MG63
1
NCI-H460 cell
1
NT2-D1 cell
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
SJCRH30
1
SK-N-MC
1
SUDHL5
1
Satellite Cells, Skeletal Muscle
1
T-helper 1 cell
1
T-helper 2 cell
1
U-266 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
Z-138
1
adipose tissue
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
arm bone
1
ascending aorta
1
astrocyte
1
astrocyte of the spinal cord
1
body of pancreas
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial goblet cell
1
cardiac mesoderm primordium
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
cingulate gyrus
1
colon carcinoma
Organ
6
connective tissue
Life stage
2
unknown
adult
Date released
4
August, 2017
2
September, 2022
1
February, 2024
Software used
6
chromhmm
1
deltasvm
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
7
AMP
RFA
7
AMP
award.project!
ENCODE
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP