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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
gene expression
4
candidate regulatory elements
2
accessible chromatin
2
chromatin state
2
target gene predictions
1
binding sites
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
13
common myeloid progenitor, CD34-positive
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
mature neutrophil
6
T cell
6
endothelial cell of umbilical vein
6
fibroblast
6
mononuclear cell
5
CD14-positive, CD16-negative classical monocyte
4
CD14-positive monocyte
4
alternatively activated macrophage
4
fibroblast of lung
4
foreskin keratinocyte
4
keratinocyte
4
mammary gland epithelial cell
4
skeletal muscle myoblast
4
trophoblast cell
3
CD4-positive, alpha-beta T cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
enterocyte
3
epithelial cell of esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
hepatocyte
3
inflammatory macrophage
3
macrophage
3
myofibroblast cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
regulatory T cell
2
cardiac fibroblast
2
Schwann cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroblast
2
fibroblast of breast
2
glomerular endothelial cell
2
goblet cell
2
hepatic stellate cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
myoepithelial cell of mammary gland
2
neutrophil
2
renal cortical epithelial cell
2
skeletal muscle cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell
2
smooth muscle cell of the brain vasculature
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial goblet cell
1
cortical cell of adrenal gland
1
epidermal melanocyte
1
epithelial cell of amnion
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
glomerular visceral epithelial cell
1
granulosa cell
1
iris pigment epithelial cell
1
luminal epithelial cell of mammary gland
1
luminal epithelial cell of prostatic duct
1
lung microvascular endothelial cell
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mammary stem cell
1
mast cell
1
mature eosinophil
1
mesenchymal stem cell
1
mesothelial cell
1
naive t cell
1
non-pigmented ciliary epithelial cell
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pericyte cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
retinal pigment epithelial cell
1
stromal cell of bone marrow
1
thyroid follicular cell
1
type II pneumocyte
Organ
3
epithelium
2
kidney
1
eye
Life stage
2
unknown
Date released
2
September, 2022
1
May, 2020
Software used
2
chromhmm
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
award.project!
T1D
Showing 3 of 3 results
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Download
FileSet
DSR129CVZ
released
Annotation file set
: Chromatin states for BSS00310 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR302XLF
released
Annotation file set
: Chromatin states for BSS00743 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR347BGE
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP