Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
chromatin state
4
target gene predictions
3
Fine-mapped variants
2
accessible chromatin
2
eQTL
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
4
bed bed9
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
23
heart
19
brain
19
stomach
17
kidney
17
muscle of arm
16
lung
15
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
10
heart left ventricle
10
renal cortex interstitium
10
renal pelvis
9
left kidney
9
liver
7
adipose tissue
7
left cardiac atrium
7
spinal cord
6
heart right ventricle
6
spleen
6
tibial nerve
5
body of pancreas
5
caudate nucleus
5
coronary artery
5
sigmoid colon
5
temporal lobe
5
tibial artery
4
angular gyrus
4
aorta
4
ascending aorta
4
chorionic villus
4
endocrine pancreas
4
gastrocnemius medialis
4
islet of Langerhans
4
layer of hippocampus
4
muscle of trunk
4
ovary
4
pancreas
4
psoas muscle
4
retina
4
right atrium auricular region
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
Peyer's patch
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
duodenal mucosa
3
frontal cortex
3
left renal cortex interstitium
3
left renal pelvis
3
mucosa of rectum
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
testis
3
upper lobe of left lung
2
muscle of leg
2
Brodmann (1909) area 46
2
breast epithelium
2
cerebellum
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
rectum smooth muscle tissue
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Ammon's horn
1
amnion
1
arm bone
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
embryonic facial prominence
1
femur
1
gastroesophageal sphincter
1
germinal center
1
inferior parietal cortex
1
leg bone
1
mid-frontal lobe
1
mucosa of stomach
1
right lobe of liver
1
skeletal muscle
1
skin of body
1
subcutaneous abdominal adipose tissue
1
umbilical cord
1
uterus
Organ
5
brain
1
bone element
1
limb
1
skeleton
Life stage
4
adult
1
embryonic
Date released
4
September, 2022
1
August, 2017
1
May, 2020
Software used
5
chromhmm
1
deltasvm
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_term_name!
duodenal mucosa
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR133TZK
released
Annotation file set
: Chromatin states for BSS00175 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR532MZI
released
Annotation file set
: Chromatin states for BSS00174 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR640QCY
released
Annotation file set
: Chromatin states for BSS00173 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR078ORA
released
Annotation file set
: Chromatin states for BSS00084 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024MBT
released
Annotation file set
: Variant allelic effects of caudate nucleus ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR952582
released
Annotation file set
: ChromHMM 13-state model for Anterior caudate
Lab:
Stephen Parker, UMich
Project:
AMP