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Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
chromatin state
4
target gene predictions
2
accessible chromatin
2
binding sites
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
4
bed bed9
2
bigBed bed9
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
6
endothelial cell of umbilical vein
5
coronary artery
5
tibial artery
4
aorta
4
ascending aorta
4
thoracic aorta
2
cardiac fibroblast
2
choroid plexus epithelial cell
2
kidney capillary endothelial cell
2
smooth muscle cell of the brain vasculature
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
brain microvascular endothelial cell
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
lung microvascular endothelial cell
1
pulmonary artery endothelial cell
Organ
6
blood vessel
6
epithelium
6
vasculature
6
vein
Life stage
3
newborn
Date released
2
January, 2020
2
September, 2022
1
August, 2017
1
May, 2020
Software used
5
chromhmm
1
deltasvm
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_type!
cell line
organ_slims!
skin of body
Showing 6 of 6 results
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FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088CRI
released
Annotation file set
: Variant allelic effects of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP