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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
7
gene expression
4
candidate regulatory elements
3
chromatin state
2
histone modifications
2
target gene predictions
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
3
bed bed9
1
bed bed3+
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
18
A549
13
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
8
B cell
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adipocyte
7
adipose tissue
7
liver
7
mature neutrophil
6
T cell
6
adrenal gland
6
endothelial cell of umbilical vein
6
fibroblast
6
left cardiac atrium
6
mononuclear cell
6
stomach
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
body of pancreas
5
caudate nucleus
5
coronary artery
5
embryonic stem cell
5
heart
5
heart right ventricle
sigmoid colon
5
spleen
5
temporal lobe
5
tibial artery
4
CD14-positive monocyte
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
islet of Langerhans
4
keratinocyte
4
kidney
4
layer of hippocampus
4
mammary gland epithelial cell
4
pancreas
4
psoas muscle
4
right atrium auricular region
4
skeletal muscle myoblast
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
brain
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
fibroblast of dermis
3
frontal cortex
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
macrophage
3
mucosa of rectum
3
myofibroblast cell
3
naive T cell
3
natural killer cell
3
ovary
3
regulatory T cell
3
right cardiac atrium
3
skeletal muscle tissue
3
small intestine
3
stomach smooth muscle
3
substantia nigra
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
HepG2
2
KARPAS-422 cell
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
T47D
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
hepatic stellate cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
lower leg skin
2
lung
2
medulla oblongata
2
mesenchymal stem cell
2
midbrain
2
middle frontal gyrus
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
rectum smooth muscle tissue
2
renal cortical epithelial cell
2
skeletal muscle cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell
2
smooth muscle cell of the brain vasculature
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
testis
2
vagina
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELR
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
Organ
4
kidney
Life stage
embryonic
3
adult
1
fetal
Date released
2
September, 2022
1
May, 2019
1
May, 2020
Software used
3
chromhmm
1
deltasvm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
left renal pelvis
sigmoid colon
relevant_life_stage!
embryonic
Showing 4 of 4 results
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Download
FileSet
DSR205PVO
released
Annotation file set
: Chromatin states for BSS01097 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181LMN
released
Annotation file set
: Chromatin states for BSS01096 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821RRV
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR394RHU
released
Annotation file set
: ChromHMM 12-state model for adult kidney from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP