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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
22
candidate regulatory elements
19
target gene predictions
10
accessible chromatin
10
gene expression
5
chromatin state
3
binding sites
3
histone modifications
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
17
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
7
mature neutrophil
5
CD14-positive, CD16-negative classical monocyte
5
embryonic stem cell
4
adipocyte
4
alternatively activated macrophage
3
CD4-positive, alpha-beta T cell
3
inflammatory macrophage
3
islet of Langerhans
2
ESC derived cell line
2
erythroblast
2
liver
1
BL-2 cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
DG-75 cell
1
GM12878
1
H1-hESC
1
HepG2
1
JVM-2 cell
1
K562
1
KARPAS-422 cell
1
SUDHL5
1
U-266 cell
1
Z-138
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
keratinocyte
1
layer of hippocampus
1
mammary epithelial cell
1
mature eosinophil
1
mid-frontal lobe
1
mucosa of rectum
1
pancreas
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
4
connective tissue
Date released
5
August, 2017
Software used
5
chromhmm
Lab
5
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
assembly!
GRCh38
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR558538
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle myoblast
Lab:
Stephen Parker, UMich
Project:
AMP