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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
17
gene expression
9
candidate regulatory elements
7
accessible chromatin
6
target gene predictions
2
chromatin state
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
1
bed bed9
1
bed bed9+
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
21
heart
19
stomach
18
brain
16
kidney
16
lung
16
muscle of arm
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
mature neutrophil
7
spinal cord
6
adipocyte
6
adipose tissue
6
left cardiac atrium
6
mononuclear cell
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
heart right ventricle
5
sigmoid colon
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
thyroid gland
4
tibial nerve
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
inflammatory macrophage
3
islet of Langerhans
3
keratinocyte
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neurosphere
3
pancreas
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
Brodmann (1909) area 46
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
germinal matrix
2
hepatocyte
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
Ammon's horn
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
H1-hESC
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
arm bone
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
bipolar neuron
1
brain microvascular endothelial cell
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
ectodermal cell
1
embryonic facial prominence
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
femur
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
inferior parietal cortex
1
iris pigment epithelial cell
1
islet precursor cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
leg bone
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary epithelial cell
1
mammary stem cell
1
mature eosinophil
1
medulla oblongata
1
mesendoderm
1
mesodermal cell
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
mucosa of stomach
1
neural cell
1
neuron
1
non-pigmented ciliary epithelial cell
1
occipital lobe
1
olfactory neurosphere cell line
Organ
1
epithelium
1
kidney
Life stage
1
child
1
unknown
Date released
1
May, 2022
1
September, 2022
Software used
2
chromhmm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
muscle of leg
biosample_type!
cell line
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR408VLN
released
Annotation file set
: Chromatin states for BSS00387 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP