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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
gene expression
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
3
bed bed9
1
bigBed bed9
File set status
2
released
1
revoked
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
cell line
Biosample term
13
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
liver
7
mature neutrophil
6
adipocyte
6
adipose tissue
6
adrenal gland
6
heart left ventricle
6
mononuclear cell
6
stomach
5
CD14-positive, CD16-negative classical monocyte
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
left cardiac atrium
5
sigmoid colon
5
spleen
5
temporal lobe
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
heart right ventricle
4
layer of hippocampus
4
psoas muscle
4
thyroid gland
4
tibial nerve
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
fibroblast of dermis
3
heart
3
inflammatory macrophage
3
islet of Langerhans
3
keratinocyte
3
kidney
3
mammary gland epithelial cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
ovary
3
pancreas
3
regulatory T cell
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
small intestine
3
stomach smooth muscle
3
substantia nigra
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
Brodmann (1909) area 46
2
brain
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
frontal cortex
2
kidney tubule cell
2
lower leg skin
2
lung
2
mesenchymal stem cell
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
skeletal muscle satellite cell
2
testis
2
vagina
1
Ammon's horn
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
bipolar neuron
1
brain microvascular endothelial cell
1
cerebellar cortex
1
chorion membrane
1
choroid plexus epithelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
hepatocyte
1
inferior parietal cortex
1
iris pigment epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary epithelial cell
1
mammary stem cell
1
mature eosinophil
1
medulla oblongata
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
mucosa of stomach
1
non-pigmented ciliary epithelial cell
1
occipital lobe
1
olfactory neurosphere cell line
1
osteoblast
1
pericyte cell
1
pons
1
pulmonary artery endothelial cell
1
putamen
1
regular cardiac myocyte
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
right lobe of liver
1
skeletal muscle
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
stromal cell of bone marrow
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thymus
1
urinary bladder
1
uterus
Organ
3
heart
Life stage
embryonic
1
adult
1
child
1
fetal
Date released
2
September, 2022
1
May, 2020
Software used
3
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
ACHN
biosample_type!
cell line
relevant_life_stage!
embryonic
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR184ZIQ
released
Annotation file set
: Chromatin states for BSS00516 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP