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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
histone modifications
5
candidate regulatory elements
4
binding sites
3
accessible chromatin
3
chromatin state
3
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
20
heart
18
A549
18
brain
18
stomach
16
kidney
16
muscle of arm
15
lung
15
muscle of leg
14
adrenal gland
14
placenta
14
small intestine
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right lung
10
hematopoietic multipotent progenitor cell
10
right kidney
10
thymus
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
heart left ventricle
7
spinal cord
6
adipocyte
6
adipose tissue
6
left cardiac atrium
6
mononuclear cell
5
MCF-7
5
endothelial cell of umbilical vein
5
mature neutrophil
5
spleen
5
temporal lobe
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
heart right ventricle
4
layer of hippocampus
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
sigmoid colon
4
thyroid gland
4
tibial nerve
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
keratinocyte
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neurosphere
3
pancreas
3
psoas muscle
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
CD14-positive, CD16-negative classical monocyte
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
KARPAS-422 cell
2
LNCaP clone FGC
2
T47D
2
alternatively activated macrophage
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
germinal matrix
2
hepatocyte
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
skin fibroblast
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DOHH2
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18507
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GM23338
1
H4
1
H54
1
H7-hESC
1
H9
1
HAP-1
1
HCT116
1
HEK293
1
HEK293T
1
HK-2 cell
Organ
2
epithelium
2
prostate gland
1
liver
Life stage
2
unknown
child
Date released
2
September, 2022
1
August, 2017
Software used
3
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
biosample_term_name!
germinal matrix
month_released!
May, 2021
relevant_life_stage!
child
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR275EDQ
released
Annotation file set
: Chromatin states for BSS00309 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR660GSF
released
Annotation file set
: Chromatin states for BSS00308 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP