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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
21
heart
19
stomach
18
brain
16
kidney
16
lung
15
small intestine
14
adrenal gland
14
placenta
13
large intestine
13
left lung
13
muscle of back
11
right lung
11
thymus
10
right kidney
9
left kidney
9
liver
9
renal cortex interstitium
renal pelvis
8
heart left ventricle
7
spinal cord
6
adipose tissue
6
left cardiac atrium
6
spleen
5
heart right ventricle
5
sigmoid colon
5
temporal lobe
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
layer of hippocampus
4
muscle of trunk
4
ovary
4
psoas muscle
4
thyroid gland
4
transverse colon
3
Peyer's patch
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
islet of Langerhans
3
mucosa of rectum
3
pancreas
3
retina
3
right cardiac atrium
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
testis
3
thoracic aorta
3
upper lobe of left lung
2
Brodmann (1909) area 46
2
breast epithelium
2
cerebellum
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
germinal matrix
2
left renal cortex interstitium
2
left renal pelvis
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
Ammon's horn
1
amnion
1
cerebellar cortex
1
embryonic facial prominence
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
mucosa of stomach
1
occipital lobe
1
pons
1
putamen
1
right lobe of liver
1
skeletal muscle
1
skin of body
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
umbilical cord
1
uterus
Organ
2
intestine
2
large intestine
2
musculature of body
1
bone element
limb
1
skeleton
Life stage
1
adult
Date released
1
August, 2017
1
September, 2022
Software used
2
chromhmm
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
2
AMP
biosample_term_name!
renal pelvis
organ_slims!
limb
Showing 2 of 2 results
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Download
FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP