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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
4
candidate regulatory elements
4
target gene predictions
1
accessible chromatin
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
4
bed bed9
2
bed bed3+
1
bigBed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
tissue
Biosample term
19
heart
19
stomach
18
A549
16
brain
16
lung
16
muscle of arm
15
small intestine
14
adrenal gland
14
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
spinal cord
6
adipocyte
6
adipose tissue
6
mononuclear cell
6
spleen
5
MCF-7
5
heart left ventricle
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
thyroid gland
4
transverse colon
3
HeLa-S3
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
mammary gland epithelial cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neurosphere
3
pancreas
3
regulatory T cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
temporal lobe
3
testis
3
tibial nerve
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
angular gyrus
2
aorta
2
ascending aorta
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
coronary artery
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
hepatocyte
2
islet of Langerhans
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mesenchymal stem cell
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skin fibroblast
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GM23338
1
H4
1
H54
1
H7-hESC
1
H9
1
HAP-1
1
HCT116
1
HEK293
1
HEK293T
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
Organ
2
pancreas
Life stage
4
embryonic
Date released
4
September, 2022
2
August, 2017
1
April, 2019
Software used
6
chromhmm
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
organ_slims!
lymphoid tissue
Showing 6 of 6 results
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Download
FileSet
DSR048DMI
released
Annotation file set
: Chromatin states for BSS01372 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR866LQQ
released
Annotation file set
: Chromatin states for BSS01371 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR285WEC
released
Annotation file set
: Chromatin states for BSS01370 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR377DHA
released
Annotation file set
: Chromatin states for BSS00272 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP