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Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
chromatin state
3
target gene predictions
1
binding sites
1
eQTL
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
3
bed bed9
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
0
in vitro differentiated cells
Biosample term
18
brain
15
small intestine
13
large intestine
5
sigmoid colon
5
temporal lobe
4
angular gyrus
4
caudate nucleus
4
layer of hippocampus
4
transverse colon
3
Peyer's patch
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
mucosa of rectum
3
substantia nigra
2
Brodmann (1909) area 46
2
cerebellum
2
frontal cortex
2
muscle layer of colon
2
muscle layer of duodenum
2
rectum smooth muscle tissue
1
Ammon's horn
1
cerebellar cortex
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
pons
1
putamen
Organ
4
brain
0
intestine
Life stage
3
adult
Date released
3
September, 2022
1
August, 2017
Software used
4
chromhmm
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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FileSet
DSR134KVZ
released
Annotation file set
: Chromatin states for BSS01126 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR320XYP
released
Annotation file set
: Chromatin states for BSS01125 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR457QPR
released
Annotation file set
: Chromatin states for BSS01124 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR013323
released
Annotation file set
: ChromHMM 13-state model for hippocampus middle
Lab:
Stephen Parker, UMich
Project:
AMP