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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
accessible chromatin
3
candidate regulatory elements
3
chromatin state
2
eQTL
2
target gene predictions
2
variant allelic effects
1
gene expression
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
3
bed bed9
1
bigBed bed9
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
0
in vitro differentiated cells
Biosample term
21
heart
19
stomach
18
brain
16
lung
16
muscle of arm
15
kidney
15
small intestine
14
adrenal gland
14
placenta
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
right kidney
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
heart left ventricle
7
spinal cord
6
adipocyte
6
adipose tissue
6
left cardiac atrium
6
spleen
5
embryonic stem cell
5
heart right ventricle
5
sigmoid colon
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
thyroid gland
4
tibial nerve
4
transverse colon
3
Peyer's patch
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
islet of Langerhans
3
mucosa of rectum
3
pancreas
3
retina
3
right cardiac atrium
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
temporal lobe
3
testis
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
Brodmann (1909) area 46
2
angular gyrus
2
breast epithelium
2
cerebellum
2
coronary artery
2
endodermal cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mesenchymal stem cell
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
Ammon's horn
1
amnion
1
arm bone
1
bipolar neuron
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cerebellar cortex
1
ectodermal cell
1
embryonic facial prominence
1
femur
1
gastroesophageal sphincter
1
germinal center
1
germinal matrix
1
globus pallidus
1
hepatocyte
1
inferior parietal cortex
1
islet precursor cell
1
leg bone
1
medulla oblongata
1
mesendoderm
1
mesodermal cell
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
mucosa of stomach
1
neural cell
1
neuron
1
occipital lobe
1
olfactory neurosphere cell line
1
pons
1
putamen
1
right lobe of liver
1
skeletal muscle
1
skin of body
1
smooth muscle cell
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
trophoblast cell
1
umbilical cord
1
uterus
Organ
3
artery
3
blood vessel
3
limb
3
vasculature
Life stage
3
adult
Date released
2
September, 2022
1
May, 2020
Software used
3
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
May, 2019
Showing 3 of 3 results
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Download
FileSet
DSR520FED
released
Annotation file set
: Chromatin states for BSS01838 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ACD
released
Annotation file set
: Chromatin states for BSS01837 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR157HZX
released
Annotation file set
: ChromHMM 18-state model for tibial artery from 26 ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP