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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
146
candidate regulatory elements
80
target gene predictions
27
accessible chromatin
11
gene expression
7
binding sites
7
eQTL
7
histone modifications
7
variant allelic effects
6
Fine-mapped variants
3
chromatin state
2
caQTL
1
differential activity
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
bed bed9
3
bed bed3+
3
bigBed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
1
rectum smooth muscle tissue
1
skeletal muscle
1
stomach smooth muscle
Organ
7
connective tissue
6
brain
5
heart
4
intestine
4
pancreas
3
epithelium
3
large intestine
3
liver
3
musculature of body
2
adipose tissue
2
blood
2
bodily fluid
1
blood vessel
1
bone element
1
bone marrow
1
embryo
1
lung
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
vasculature
1
vein
Date released
3
August, 2017
Software used
3
chromhmm
Lab
3
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
files.file_type!
bed bed9
month_released!
August, 2018
March, 2023
Showing 3 of 3 results
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FileSet
TSTSR469602
released
Annotation file set
: ChromHMM 13-state model for stomach smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR344424
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP