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Schema
Citing CMDGA
Clear Filters
Annotation type
12
binding sites
9
accessible chromatin
9
target gene predictions
5
histone modifications
4
candidate regulatory elements
3
chromatin state
2
variant allelic effects
1
eQTL
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
1
fibroblast of mammary gland
1
mammary epithelial cell
1
mammary gland epithelial cell
Organ
67
kidney
56
musculature of body
47
lung
40
epithelium
37
heart
36
brain
36
limb
33
extraembryonic component
32
intestine
31
connective tissue
27
embryo
22
skin of body
18
large intestine
16
placenta
16
vasculature
15
stomach
14
small intestine
13
ureter
11
blood vessel
11
thymus
10
penis
9
eye
8
adrenal gland
8
bone element
8
liver
8
spinal cord
7
blood
7
bodily fluid
6
pancreas
5
vein
4
lymph node
4
prostate gland
3
gonad
3
mammary gland
3
mouth
3
skeleton
2
adipose tissue
2
artery
2
bone marrow
2
bronchus
2
lymphatic vessel
2
lymphoid tissue
2
spleen
2
testis
2
tongue
1
esophagus
1
ovary
1
urinary bladder
0
thyroid gland
Life stage
adult
2
unknown
Date released
2
September, 2022
1
August, 2017
Software used
3
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
relevant_life_stage!
adult
Showing 3 of 3 results
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Download
FileSet
DSR848OMG
released
Annotation file set
: Chromatin states for BSS00343 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887SUU
released
Annotation file set
: Chromatin states for BSS01209 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR538274
released
Annotation file set
: ChromHMM 13-state model for HMEC
Lab:
Stephen Parker, UMich
Project:
AMP